Mercurial > dive4elements > river
annotate backend/contrib/import_river.sh @ 9767:69653f4dd754 3.2.x
Mark runtime dependencies
| author | Tom Gottfried <tom@intevation.de> |
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| date | Mon, 16 Jan 2023 14:14:30 +0100 |
| parents | 0a5239a1e46e |
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| rev | line source |
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1 #!/bin/bash |
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2 # Import script for rivers |
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3 # |
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4 # Authors: |
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5 # Andre Heinecke <aheinecke@intevation.de> |
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6 # |
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7 # Copyright: |
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8 # Copyright (C) 2013 Intevation GmbH |
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9 # |
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10 # This program is free software; you can redistribute it and/or |
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11 # modify it under the terms of the GNU General Public License |
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12 # as published by the Free Software Foundation; either version 2 |
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13 # of the License, or (at your option) any later version. |
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14 # |
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15 # This program is distributed in the hope that it will be useful, |
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16 # but WITHOUT ANY WARRANTY; without even the implied warranty of |
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17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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18 # GNU General Public License for more details. |
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19 # |
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20 # You should have received a copy of the GNU General Public License |
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21 # along with this program; if not, write to the Free Software |
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22 # Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. |
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23 |
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24 set -e |
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25 |
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26 # Default settings |
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27 DEFAULT_HOST=localhost |
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28 DEFAULT_PORT=1521 |
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29 DEFAULT_USER=flys_dami |
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30 DEFAULT_PASS=flys_dami |
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31 DEFAULT_LOG=$PWD/logs |
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32 DEFAULT_BACKEND_NAME="XE" |
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33 JAR="bin/river-backend-1.0-SNAPSHOT*.jar" |
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34 IMPORTER_DRY_RUN=false |
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35 IMPORTER_MAINVALUE_TYPES=QWTD- |
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36 IMPORTER_ANNOTATION_TYPES="conf/annotation-types.xml" |
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37 |
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38 |
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39 MIN_MEMORY="8024m" |
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40 |
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41 # Default encoding. Change here if necessary |
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42 export LC_ALL=de_DE@euro |
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43 |
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44 usage(){ |
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45 cat << EOF |
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46 |
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47 usage: $0 [options] gew_file |
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48 |
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49 Import a river described by the gew_file |
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50 |
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51 OPTIONS: |
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52 -?, --help Show this message |
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53 -u, --username=<username> Database username. Default: $DEFAULT_USER |
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54 -w, --password=<password> Database password. Default: $DEFAULT_PASS |
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55 -h, --host=<host> Connect to database on host <host>. |
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56 Default: $DEFAULT_HOST |
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57 -p, --port=<number> Use port number <number>. Default: $DEFAULT_PORT |
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58 -d, --db-name=<database_name> Name of the database / backend. Default: $DEFAULT_BACKEND_NAME |
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59 -l, --log-dir=<directory> Directory in which to create the log files. |
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60 Default: $PWD/logs |
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61 --postgres Database is PostgreSQL |
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62 --skip-hydro Skip import of hydrological data |
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63 --skip-morpho Skip import of morphological data |
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64 --skip-geo Skip import of geographic data |
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65 --skip-prf Skip import of cross section data |
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66 EOF |
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67 exit 0 |
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68 } |
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69 |
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70 OPTS=`getopt -o ?u:w:h:p:d:l: \ |
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71 -l help,username:,password:,host:,port:,db-name:,log-dir:,skip-hydro,skip-morpho,skip-geo,skip-prf,postgres \ |
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72 -n $0 -- "$@"` |
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73 if [ $? != 0 ] ; then usage; fi |
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74 eval set -- "$OPTS" |
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75 while true ; do |
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76 case "$1" in |
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77 "-?"|"--help") |
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78 usage;; |
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79 "--") |
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80 shift |
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81 break;; |
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82 "-u"|"--username") |
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83 DBUSER=$2 |
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84 shift 2;; |
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85 "-w"|"--password") |
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86 DBPASS=$2 |
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87 shift 2;; |
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88 "-h"|"--host") |
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89 DBHOST=$2 |
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90 shift 2;; |
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91 "-p"|"--port") |
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92 DBPORT=$2 |
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93 shift 2;; |
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94 "-l"|"--log-dir") |
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95 LOG=$2 |
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96 shift 2;; |
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97 "-d"|"--db-name") |
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98 BACKEND_NAME=$2 |
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99 shift 2;; |
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100 "--skip-hydro") |
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101 SKIP_HYDRO="TRUE" |
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102 shift;; |
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103 "--skip-morpho") |
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104 SKIP_MORPHO="TRUE" |
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105 shift;; |
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106 "--skip-prf") |
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107 SKIP_PRF="TRUE" |
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108 shift;; |
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109 "--skip-geo") |
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110 SKIP_GEO="TRUE" |
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111 shift;; |
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112 "--postgres") |
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113 POSTGRES="TRUE" |
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114 shift;; |
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115 *) |
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116 echo "Unknown Option $1" |
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117 usage;; |
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118 esac |
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119 done |
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120 |
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121 if [ -z $DBUSER ]; then |
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122 DBUSER=$DEFAULT_USER |
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123 fi |
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124 if [ -z $DBPASS ]; then |
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125 DBPASS=$DEFAULT_PASS |
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126 fi |
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127 if [ -z $DBPORT ]; then |
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128 DBPORT=$DEFAULT_PORT |
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129 fi |
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130 if [ -z $DBHOST ]; then |
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131 DBHOST=$DEFAULT_HOST |
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132 fi |
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133 if [ -z $BACKEND_NAME ]; then |
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134 BACKEND_NAME=$DEFAULT_BACKEND_NAME |
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135 fi |
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136 if [ -z $LOG ]; then |
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137 LOG=$DEFAULT_LOG |
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138 fi |
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139 |
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140 if [ $# != 1 ]; then |
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141 usage |
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142 fi |
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143 |
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144 if [ ! -r $1 ]; then |
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145 echo "Could not open $1 please ensure it exists and is readable" |
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146 fi |
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147 |
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148 GEW_FILE="$1" |
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149 RIVER_NAME=$(grep "Gew.sser" "$1" | sed 's/Gew.sser: //') |
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150 DATE=$(date +%Y.%m.%d_%H%M) |
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151 LOG_DIR=${LOG}/`basename $GEW_FILE .gew`-$DATE |
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152 mkdir -p ${LOG_DIR} |
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153 |
| 9726 | 154 cat > "$LOG_DIR/log4j2.xml" << "EOF" |
| 155 <?xml version="1.0" encoding="UTF-8"?> | |
| 156 <Configuration> | |
| 157 <Appenders> | |
| 158 <RollingFile | |
| 159 name="RollingFile" | |
| 160 fileName="import.log" | |
| 161 filePattern="import.log.%i"> | |
| 162 <PatternLayout pattern="%d{HH:mm:ss.SSS} [%t] %-5p %c - %m%n"/> | |
| 163 <SizeBasedTriggeringPolicy size="100000 KB"/> | |
| 164 <DefaultRolloverStrategy max="10"/> | |
| 165 </RollingFile> | |
| 166 </Appenders> | |
| 167 <Loggers> | |
| 168 <Root level="DEBUG"> | |
| 169 <AppenderRef ref="RollingFile"/> | |
| 170 </Root> | |
| 171 </Loggers> | |
| 172 </Configuration> | |
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173 EOF |
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174 |
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175 if [ "$POSTGRES" = "TRUE" ]; then |
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176 JAR=$(echo "$JAR" | sed 's/importer/importer_psql/') |
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177 if [ ! -r "$JAR" ]; then |
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178 echo "Could not find Postgres importer $JAR" |
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179 exit 1 |
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180 fi |
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181 OGR_CONNECTION="PG:dbname=$BACKEND_NAME host=$DBHOST port=$DBPORT \ |
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182 user=$DBUSER password=$DBPASS" |
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183 BACKEND_DB_PREFIX="jdbc:postgresql:" |
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184 BACKEND_DB_DRIVER="org.postgresql.Driver" |
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185 BACKEND_DB_DIALECT="org.hibernate.dialect.PostgreSQLDialect" |
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186 else |
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187 BACKEND_DB_PREFIX="jdbc:oracle:thin:@" |
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188 BACKEND_DB_DRIVER="oracle.jdbc.OracleDriver" |
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189 BACKEND_DB_DIALECT="org.hibernate.dialect.OracleDialect" |
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190 fi |
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191 |
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192 BACKEND_URL=$BACKEND_DB_PREFIX//$DBHOST:$DBPORT/$BACKEND_NAME |
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193 |
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194 echo "Importing $RIVER_NAME into $BACKEND_URL." |
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195 |
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196 import_hydro(){ |
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197 LOG_FILE=${LOG_DIR}/hydro.log |
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198 echo Importing Hydrological data. |
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199 echo Logging into: $LOG_FILE |
| 9726 | 200 sed -i "s/import.log/$LOG_FILE/" $LOG_DIR/log4j2.xml |
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201 java -jar \ |
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202 -Xmx$MIN_MEMORY \ |
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203 -server \ |
| 9726 | 204 -Dlog4j2.configurationFile=file://$LOG_DIR/log4j2.xml \ |
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205 -Dflys.backend.user=$DBUSER \ |
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206 -Dflys.backend.password=$DBPASS \ |
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207 -Dflys.backend.url=$BACKEND_URL \ |
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208 -Dflys.backend.driver=$BACKEND_DB_DRIVER \ |
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209 -Dflys.backend.dialect=$BACKEND_DB_DIALECT \ |
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210 -Dflys.backend.importer.infogew.file="$GEW_FILE" \ |
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211 -Dflys.backend.main.value.types=$IMPORTER_MAINVALUE_TYPES \ |
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212 -Dflys.backend.importer.annotation.types=$IMPORTER_ANNOTATION_TYPES \ |
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213 -Dflys.backend.importer.dry.run=$IMPORTER_DRY_RUN \ |
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214 -Dflys.backend.importer.skip.annotations=false \ |
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215 -Dflys.backend.importer.skip.bwastr=false \ |
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216 -Dflys.backend.importer.skip.extra.wsts=false \ |
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217 -Dflys.backend.importer.skip.fixations=false \ |
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218 -Dflys.backend.importer.skip.flood.water=false \ |
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219 -Dflys.backend.importer.skip.flood.protection=false \ |
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220 -Dflys.backend.importer.skip.gauges=false \ |
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221 -Dflys.backend.importer.skip.historical.discharge.tables=true \ |
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222 -Dflys.backend.importer.skip.hyks=false \ |
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223 -Dflys.backend.importer.skip.official.lines=false \ |
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224 -Dflys.backend.importer.skip.prfs=true \ |
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225 -Dflys.backend.importer.skip.w80s=true \ |
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226 -Dflys.backend.importer.skip.w80.csvs=true \ |
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227 -Dflys.backend.importer.skip.da50s=true \ |
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228 -Dflys.backend.importer.skip.da66s=true \ |
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229 -Dflys.backend.importer.skip.wst=false \ |
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230 -Dflys.backend.importer.skip.measurement.stations=true \ |
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231 -Dflys.backend.importer.skip.waterlevel.differences=true \ |
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232 -Dflys.backend.importer.skip.waterlevels=true \ |
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233 -Dflys.backend.importer.skip.sq.relation=true \ |
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234 -Dflys.backend.importer.skip.sediment.density=true \ |
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235 -Dflys.backend.importer.skip.sediment.load=true \ |
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236 -Dflys.backend.importer.skip.sediment.load.ls=true \ |
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237 -Dflys.backend.importer.skip.morphological.width=true \ |
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238 -Dflys.backend.importer.skip.porosity=true \ |
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239 -Dflys.backend.importer.skip.flow.velocity=true \ |
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240 -Dflys.backend.importer.skip.bed.height=true \ |
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241 $JAR |
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242 } |
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243 |
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244 import_morpho(){ |
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245 LOG_FILE=${LOG_DIR}/morpho.log |
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246 echo Importing Morphological data. |
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247 echo Logging into: $LOG_FILE |
| 9726 | 248 sed -i "s/import.log/$LOG_FILE/" $LOG_DIR/log4j2.xml |
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249 java -jar \ |
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250 -Xmx$MIN_MEMORY \ |
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251 -server \ |
| 9726 | 252 -Dlog4j2.configurationFile=file://$LOG_DIR/log4j2.xml \ |
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253 -Dflys.backend.user=$DBUSER \ |
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254 -Dflys.backend.password=$DBPASS \ |
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255 -Dflys.backend.url=$BACKEND_URL \ |
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256 -Dflys.backend.driver=$BACKEND_DB_DRIVER \ |
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257 -Dflys.backend.dialect=$BACKEND_DB_DIALECT \ |
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258 -Dflys.backend.importer.infogew.file="$GEW_FILE" \ |
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259 -Dflys.backend.main.value.types=$IMPORTER_MAINVALUE_TYPES \ |
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260 -Dflys.backend.importer.annotation.types=$IMPORTER_ANNOTATION_TYPES \ |
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261 -Dflys.backend.importer.dry.run=$IMPORTER_DRY_RUN \ |
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262 -Dflys.backend.importer.skip.annotations=true \ |
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263 -Dflys.backend.importer.skip.bwastr=true \ |
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264 -Dflys.backend.importer.skip.extra.wsts=true \ |
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265 -Dflys.backend.importer.skip.fixations=true \ |
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266 -Dflys.backend.importer.skip.flood.water=true \ |
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267 -Dflys.backend.importer.skip.flood.protection=true \ |
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268 -Dflys.backend.importer.skip.gauges=true \ |
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269 -Dflys.backend.importer.skip.historical.discharge.tables=true \ |
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270 -Dflys.backend.importer.skip.hyks=true \ |
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271 -Dflys.backend.importer.skip.official.lines=true \ |
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272 -Dflys.backend.importer.skip.prfs=true \ |
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273 -Dflys.backend.importer.skip.w80s=true \ |
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274 -Dflys.backend.importer.skip.w80.csvs=true \ |
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275 -Dflys.backend.importer.skip.da50s=true \ |
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276 -Dflys.backend.importer.skip.da66s=true \ |
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277 -Dflys.backend.importer.skip.wst=true \ |
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278 -Dflys.backend.importer.skip.measurement.stations=false \ |
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279 -Dflys.backend.importer.skip.waterlevel.differences=false \ |
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280 -Dflys.backend.importer.skip.waterlevels=false \ |
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281 -Dflys.backend.importer.skip.sq.relation=false \ |
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282 -Dflys.backend.importer.skip.sediment.density=false \ |
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283 -Dflys.backend.importer.skip.sediment.load=false \ |
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284 -Dflys.backend.importer.skip.sediment.load.ls=false \ |
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285 -Dflys.backend.importer.skip.morphological.width=false \ |
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286 -Dflys.backend.importer.skip.porosity=false \ |
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287 -Dflys.backend.importer.skip.flow.velocity=false \ |
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288 -Dflys.backend.importer.skip.bed.height=false \ |
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289 $JAR |
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290 } |
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291 |
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292 import_prf(){ |
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293 LOG_FILE=${LOG_DIR}/prf.log |
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294 echo Importing cross section data. |
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295 echo Logging into: $LOG_FILE |
| 9726 | 296 sed -i "s/import.log/$LOG_FILE/" $LOG_DIR/log4j2.xml |
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297 java -jar \ |
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298 -Xmx$MIN_MEMORY \ |
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299 -server \ |
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301 -Dflys.backend.user=$DBUSER \ |
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302 -Dflys.backend.password=$DBPASS \ |
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303 -Dflys.backend.url=$BACKEND_URL \ |
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304 -Dflys.backend.driver=$BACKEND_DB_DRIVER \ |
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305 -Dflys.backend.dialect=$BACKEND_DB_DIALECT \ |
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306 -Dflys.backend.importer.infogew.file="$GEW_FILE" \ |
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307 -Dflys.backend.main.value.types=$IMPORTER_MAINVALUE_TYPES \ |
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308 -Dflys.backend.importer.annotation.types=$IMPORTER_ANNOTATION_TYPES \ |
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309 -Dflys.backend.importer.dry.run=$IMPORTER_DRY_RUN \ |
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310 -Dflys.backend.importer.skip.annotations=true \ |
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311 -Dflys.backend.importer.skip.bwastr=true \ |
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312 -Dflys.backend.importer.skip.extra.wsts=true \ |
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313 -Dflys.backend.importer.skip.fixations=true \ |
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314 -Dflys.backend.importer.skip.flood.water=true \ |
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315 -Dflys.backend.importer.skip.flood.protection=true \ |
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316 -Dflys.backend.importer.skip.gauges=true \ |
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317 -Dflys.backend.importer.skip.historical.discharge.tables=true \ |
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318 -Dflys.backend.importer.skip.hyks=true \ |
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319 -Dflys.backend.importer.skip.official.lines=true \ |
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320 -Dflys.backend.importer.skip.prfs=false \ |
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321 -Dflys.backend.importer.skip.w80s=false \ |
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322 -Dflys.backend.importer.skip.w80.csvs=false \ |
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323 -Dflys.backend.importer.skip.da50s=false \ |
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324 -Dflys.backend.importer.skip.da66s=false \ |
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325 -Dflys.backend.importer.skip.wst=true \ |
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326 -Dflys.backend.importer.skip.measurement.stations=true \ |
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327 -Dflys.backend.importer.skip.waterlevel.differences=true \ |
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328 -Dflys.backend.importer.skip.waterlevels=true \ |
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329 -Dflys.backend.importer.skip.sq.relation=true \ |
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330 -Dflys.backend.importer.skip.sediment.density=true \ |
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331 -Dflys.backend.importer.skip.sediment.load=true \ |
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332 -Dflys.backend.importer.skip.sediment.load.ls=true \ |
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333 -Dflys.backend.importer.skip.morphological.width=true \ |
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334 -Dflys.backend.importer.skip.porosity=true \ |
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335 -Dflys.backend.importer.skip.flow.velocity=true \ |
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336 -Dflys.backend.importer.skip.bed.height=true \ |
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337 $JAR |
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338 } |
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339 |
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340 import_geo(){ |
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341 LOG_FILE=${LOG_DIR}/geo.log |
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342 echo Importing Geographic data. |
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343 echo Logging into: $LOG_FILE |
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344 |
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345 RIVER_PATH=$(grep "WSTDatei:" "$GEW_FILE" | awk '{print $2}') |
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346 RIVER_PATH=$(dirname "$RIVER_PATH")/../.. |
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347 RIVER_PATH=$(readlink -f "$RIVER_PATH") |
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348 |
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349 exec python $(dirname $0)/shpimporter/shpimporter.py \ |
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350 --directory $RIVER_PATH \ |
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351 --river_name "$RIVER_NAME" \ |
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352 --ogr_connection "$OGR_CONNECTION" \ |
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353 --host $DBHOST/$BACKEND_NAME \ |
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354 --user $DBUSER \ |
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355 --password $DBPASS \ |
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356 --verbose 1 \ |
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db1a000a21a9
Make OPTIONAL_LIBS overwritable and fix geo importer call
Andre Heinecke <aheinecke@intevation.de>
parents:
5168
diff
changeset
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357 > "$LOG_FILE" 2>&1 |
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5167
a0abb6787ab1
Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff
changeset
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358 } |
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a0abb6787ab1
Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff
changeset
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359 |
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a0abb6787ab1
Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff
changeset
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360 |
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a0abb6787ab1
Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff
changeset
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361 if [ "$SKIP_HYDRO" != "TRUE" ]; then |
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a0abb6787ab1
Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff
changeset
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362 import_hydro |
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a0abb6787ab1
Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff
changeset
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363 fi |
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6825
3aff1b00618a
import_rivers.sh: skip cross sections instead of WST-file in first run.
Tom Gottfried <tom.gottfried@intevation.de>
parents:
6706
diff
changeset
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364 if [ "$SKIP_PRF" != "TRUE" ]; then |
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3aff1b00618a
import_rivers.sh: skip cross sections instead of WST-file in first run.
Tom Gottfried <tom.gottfried@intevation.de>
parents:
6706
diff
changeset
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365 import_prf |
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5167
a0abb6787ab1
Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff
changeset
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366 fi |
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a0abb6787ab1
Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff
changeset
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367 if [ "$SKIP_MORPHO" != "TRUE" ]; then |
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a0abb6787ab1
Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff
changeset
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368 import_morpho |
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a0abb6787ab1
Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff
changeset
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369 fi |
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a0abb6787ab1
Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff
changeset
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370 if [ "$SKIP_GEO" != "TRUE" ]; then |
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a0abb6787ab1
Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff
changeset
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371 import_geo |
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a0abb6787ab1
Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff
changeset
|
372 fi |