annotate backend/contrib/run_hydr_morph.sh @ 7300:83bb52fa0c32

(issue1529) Be more tolerant in the fitting. The invalid value warning is removed because invalid data is expected there when datapoints are not valid for this KM
author Andre Heinecke <aheinecke@intevation.de>
date Fri, 11 Oct 2013 18:40:33 +0200
parents 14b5674e57a4
children 25912df0facf
rev   line source
3683
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
1 #!/bin/bash
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
2
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
3 ######################### CONFIG OPTIONS ############################
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
4 INFO_GEW="/vol1/projects/Geospatial/flys-3.0/testdaten/saar.gew"
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
5 BACKEND_USER="flys28"
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
6 BACKEND_PASS="flys28"
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
7 BACKEND_HOST="czech-republic.atlas.intevation.de"
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
8 BACKEND_PORT="1521"
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
9 BACKEND_NAME="XE"
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
10 LOG4J_CONFIG="conf/log4j.properties"
5066
8208df10df79 Update run example scripts to work with the new packaging
Andre Heinecke <aheinecke@intevation.de>
parents: 4766
diff changeset
11 JAR="hydr_morph/importer.jar"
3683
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
12 #####################################################################
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
13
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
14
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
15 ########################## Oracle Settings ##########################
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
16 BACKEND_DB_PREFIX="jdbc:oracle:thin:@"
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
17 BACKEND_DB_DRIVER="oracle.jdbc.OracleDriver"
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
18 BACKEND_DB_DIALECT="org.hibernate.dialect.OracleDialect"
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
19 BACKEND_URL=$BACKEND_DB_PREFIX//$BACKEND_HOST:$BACKEND_PORT/$BACKEND_NAME
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
20 #####################################################################
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
21
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
22
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
23 ######################## Custom Importer Settings ###################
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
24 IMPORTER_DRY_RUN=false
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
25 IMPORTER_MAINVALUE_TYPES=QWTD
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
26 IMPORTER_ANNOTATION_TYPES="conf/annotation-types.xml"
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
27
5043
63ad79657453 importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5042
diff changeset
28 IMPORTER_SKIP_ANNOTATIONS=false
63ad79657453 importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5042
diff changeset
29 IMPORTER_SKIP_BWASTR=false
63ad79657453 importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5042
diff changeset
30 IMPORTER_SKIP_DA50S=false
63ad79657453 importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5042
diff changeset
31 IMPORTER_SKIP_DA66S=false
63ad79657453 importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5042
diff changeset
32 IMPORTER_SKIP_EXTRA_WST=false
63ad79657453 importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5042
diff changeset
33 IMPORTER_SKIP_FIXATIONS=false
63ad79657453 importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5042
diff changeset
34 IMPORTER_SKIP_FLOOD_WATER=false
63ad79657453 importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5042
diff changeset
35 IMPORTER_SKIP_FLOOD_PROTECTION=false
3683
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
36 IMPORTER_SKIP_GAUGES=false
4135
ac93f397018d Importer: Ignore historical discharge tables.
Sascha L. Teichmann <teichmann@intevation.de>
parents: 3683
diff changeset
37 IMPORTER_SKIP_HISTORICAL_DISCHARGE_GAUGES=false
5043
63ad79657453 importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5042
diff changeset
38 IMPORTER_SKIP_HYKS=false
63ad79657453 importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5042
diff changeset
39 IMPORTER_SKIP_OFFICIAL_LINES=false
3683
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
40 IMPORTER_SKIP_PRFS=false
4766
655e86f025c1 run_hydr_morph.sh: Add SKIP_DA50 and SKIP_W80 flags.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 4711
diff changeset
41 IMPORTER_SKIP_W80S=false
5807
b9ae676a9afe Config: Add new flag to skip w80-csv imports (which are not done yet anyways).
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5086
diff changeset
42 IMPORTER_SKIP_W80_CSVS=false
5043
63ad79657453 importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5042
diff changeset
43 IMPORTER_SKIP_WST=false
3683
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
44
6417
14b5674e57a4 Importer: add skip flag for measurement stations to scripts
Tom Gottfried <tom@intevation.de>
parents: 5838
diff changeset
45 IMPORTER_SKIP_MEASUREMENT_STATIONS=false
3683
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
46 IMPORTER_SKIP_BED_HEIGHT_SINGLE=false
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
47 IMPORTER_SKIP_BED_HEIGHT_EPOCH=false
5043
63ad79657453 importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5042
diff changeset
48 IMPORTER_SKIP_FLOW_VELOCITY=false
3683
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
49 IMPORTER_SKIP_MORPHOLOGICAL_WIDTH=false
5043
63ad79657453 importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5042
diff changeset
50 IMPORTER_SKIP_SEDIMENT_DENSITY=false
3683
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
51 IMPORTER_SKIP_SEDIMENT_YIELD=false
5043
63ad79657453 importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5042
diff changeset
52 IMPORTER_SKIP_SQ_RELATION=false
3683
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
53 IMPORTER_SKIP_WATERLEVELS=false
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
54 IMPORTER_SKIP_WATERLEVEL_DIFFERENCES=false
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
55 #####################################################################
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
56
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
57 #MIN_MEMORY="8192m"
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
58 MIN_MEMORY="1024m"
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
59
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
60
5066
8208df10df79 Update run example scripts to work with the new packaging
Andre Heinecke <aheinecke@intevation.de>
parents: 4766
diff changeset
61 ######################### Run Importer ##############################
8208df10df79 Update run example scripts to work with the new packaging
Andre Heinecke <aheinecke@intevation.de>
parents: 4766
diff changeset
62 OPTIONAL_LIBS="${DIR}"/../opt
8208df10df79 Update run example scripts to work with the new packaging
Andre Heinecke <aheinecke@intevation.de>
parents: 4766
diff changeset
63 if [ -d "$OPTIONAL_LIBS" ]; then
8208df10df79 Update run example scripts to work with the new packaging
Andre Heinecke <aheinecke@intevation.de>
parents: 4766
diff changeset
64 export PATH="$OPTIONAL_LIBS/bin:$PATH"
8208df10df79 Update run example scripts to work with the new packaging
Andre Heinecke <aheinecke@intevation.de>
parents: 4766
diff changeset
65 export LD_LIBRARY_PATH="$OPTIONAL_LIBS/lib:$LD_LIBRARY_PATH"
8208df10df79 Update run example scripts to work with the new packaging
Andre Heinecke <aheinecke@intevation.de>
parents: 4766
diff changeset
66 export LD_LIBRARY_PATH="$OPTIONAL_LIBS/lib64:$LD_LIBRARY_PATH"
8208df10df79 Update run example scripts to work with the new packaging
Andre Heinecke <aheinecke@intevation.de>
parents: 4766
diff changeset
67 fi
3683
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
68
5066
8208df10df79 Update run example scripts to work with the new packaging
Andre Heinecke <aheinecke@intevation.de>
parents: 4766
diff changeset
69 export LC_ALL=de_DE@euro # Workaround encoding problem
3683
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
70
5066
8208df10df79 Update run example scripts to work with the new packaging
Andre Heinecke <aheinecke@intevation.de>
parents: 4766
diff changeset
71 exec java -jar \
3683
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
72 -Xmx$MIN_MEMORY \
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
73 -server \
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
74 -Dlog4j.configuration=file://`readlink -f $LOG4J_CONFIG` \
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
75 -Dflys.backend.importer.infogew.file=$INFO_GEW \
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
76 -Dflys.backend.main.value.types=$IMPORTER_MAINVALUE_TYPES \
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
77 -Dflys.backend.importer.annotation.types=$IMPORTER_ANNOTATION_TYPES \
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
78 -Dflys.backend.importer.dry.run=$IMPORTER_DRY_RUN \
5042
70650981a54d importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5018
diff changeset
79 -Dflys.backend.importer.skip.annotations=$IMPORTER_SKIP_ANNOTATIONS \
70650981a54d importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5018
diff changeset
80 -Dflys.backend.importer.skip.bed.height.single=$IMPORTER_SKIP_BED_HEIGHT_SINGLE \
70650981a54d importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5018
diff changeset
81 -Dflys.backend.importer.skip.bed.height.epoch=$IMPORTER_SKIP_BED_HEIGHT_EPOCH \
5018
e939098ee272 run_hydr_morph.sh,Config: Add flags for importer to skip bwastr_id.csv parsing.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 4766
diff changeset
82 -Dflys.backend.importer.skip.bwastr=$IMPORTER_SKIP_BWASTR \
4766
655e86f025c1 run_hydr_morph.sh: Add SKIP_DA50 and SKIP_W80 flags.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 4711
diff changeset
83 -Dflys.backend.importer.skip.da50s=$IMPORTER_SKIP_DA50S \
4711
35dd03e04e38 Added new parameter SKIP_DA66S to importer.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 4135
diff changeset
84 -Dflys.backend.importer.skip.da66s=$IMPORTER_SKIP_DA66S \
3683
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
85 -Dflys.backend.importer.skip.extra.wsts=$IMPORTER_SKIP_EXTRA_WST \
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
86 -Dflys.backend.importer.skip.fixations=$IMPORTER_SKIP_FIXATIONS \
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
87 -Dflys.backend.importer.skip.flood.water=$IMPORTER_SKIP_FLOOD_WATER \
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
88 -Dflys.backend.importer.skip.flood.protection=$IMPORTER_SKIP_FLOOD_PROTECTION \
6417
14b5674e57a4 Importer: add skip flag for measurement stations to scripts
Tom Gottfried <tom@intevation.de>
parents: 5838
diff changeset
89 -Dflys.backend.importer.skip.measurement.stations=$IMPORTER_SKIP_MEASUREMENT_STATIONS \
5042
70650981a54d importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5018
diff changeset
90 -Dflys.backend.importer.skip.flow.velocity=$IMPORTER_SKIP_FLOW_VELOCITY \
70650981a54d importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5018
diff changeset
91 -Dflys.backend.importer.skip.gauges=$IMPORTER_SKIP_GAUGES \
70650981a54d importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5018
diff changeset
92 -Dflys.backend.importer.skip.historical.discharge.tables=$IMPORTER_SKIP_HISTORICAL_DISCHARGE_GAUGES \
70650981a54d importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5018
diff changeset
93 -Dflys.backend.importer.skip.hyks=$IMPORTER_SKIP_HYKS \
70650981a54d importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5018
diff changeset
94 -Dflys.backend.importer.skip.morphological.width=$IMPORTER_SKIP_MORPHOLOGICAL_WIDTH \
70650981a54d importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5018
diff changeset
95 -Dflys.backend.importer.skip.official.lines=$IMPORTER_SKIP_OFFICIAL_LINES \
70650981a54d importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5018
diff changeset
96 -Dflys.backend.importer.skip.prfs=$IMPORTER_SKIP_PRFS \
3683
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
97 -Dflys.backend.importer.skip.sediment.density=$IMPORTER_SKIP_SEDIMENT_DENSITY \
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
98 -Dflys.backend.importer.skip.sediment.yield=$IMPORTER_SKIP_SEDIMENT_YIELD \
5042
70650981a54d importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5018
diff changeset
99 -Dflys.backend.importer.skip.sq.relation=$IMPORTER_SKIP_SQ_RELATION \
70650981a54d importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5018
diff changeset
100 -Dflys.backend.importer.skip.w80s=$IMPORTER_SKIP_W80S \
5807
b9ae676a9afe Config: Add new flag to skip w80-csv imports (which are not done yet anyways).
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5086
diff changeset
101 -Dflys.backend.importer.skip.w80.csvs=$IMPORTER_SKIP_W80_CSVS \
3683
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
102 -Dflys.backend.importer.skip.waterlevels=$IMPORTER_SKIP_WATERLEVELS \
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
103 -Dflys.backend.importer.skip.waterlevel.differences=$IMPORTER_SKIP_WATERLEVEL_DIFFERENCES \
5042
70650981a54d importer: Sort options alphabetically.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 5018
diff changeset
104 -Dflys.backend.importer.skip.wst=$IMPORTER_SKIP_WST \
3683
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
105 -Dflys.backend.user=$BACKEND_USER \
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
106 -Dflys.backend.password=$BACKEND_PASS \
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
107 -Dflys.backend.url=$BACKEND_URL \
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
108 -Dflys.backend.driver=$BACKEND_DB_DRIVER \
4298ef9bd4a6 Added run scripts for both importers.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
109 -Dflys.backend.dialect=$BACKEND_DB_DIALECT \
5066
8208df10df79 Update run example scripts to work with the new packaging
Andre Heinecke <aheinecke@intevation.de>
parents: 4766
diff changeset
110 $JAR

http://dive4elements.wald.intevation.org