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annotate flys-artifacts/src/main/java/de/intevation/flys/artifacts/model/fixings/Fitting.java @ 3030:c489f7e16c28

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FixA: Local variable shadowed instance variable. flys-artifacts/trunk@4599 c6561f87-3c4e-4783-a992-168aeb5c3f6f
author Sascha L. Teichmann <sascha.teichmann@intevation.de>
date Wed, 06 Jun 2012 08:26:33 +0000
parents 705d2058b682
children ee653971fa84
rev   line source
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1 package de.intevation.flys.artifacts.model.fixings;
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2
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3 import de.intevation.flys.artifacts.math.fitting.Function;
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4
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5 import de.intevation.flys.artifacts.math.Outlier;
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6
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7 import de.intevation.flys.artifacts.math.Outlier.IndexedValue;
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8 import de.intevation.flys.artifacts.math.Outlier.Outliers;
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9
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10 import org.apache.commons.math.MathException;
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11
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12 import org.apache.commons.math.optimization.fitting.CurveFitter;
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13
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14 import org.apache.commons.math.optimization.general.LevenbergMarquardtOptimizer;
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15
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16 import gnu.trove.TDoubleArrayList;
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17
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18 import org.apache.log4j.Logger;
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19
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20 import java.util.ArrayList;
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21 import java.util.List;
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22
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23 public class Fitting
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24 {
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25 private static Logger log = Logger.getLogger(Fitting.class);
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26
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27 /** Use instance of this factory to find meta infos for outliers. */
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28 public interface QWFactory {
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29
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30 QW create(double q, double w);
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31
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32 } // interface QWFactory
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33
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34 public static final QWFactory QW_FACTORY = new QWFactory() {
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35 @Override
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36 public QW create(double q, double w) {
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37 return new QW(q, w);
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38 }
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39 };
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40
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41 protected boolean checkOutliers;
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42 protected Function function;
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43 protected QWFactory qwFactory;
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44 protected double chiSqr;
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45 protected double [] parameters;
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46 protected ArrayList<QW> removed;
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47 protected QW [] referenced;
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48
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49
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50 public Fitting() {
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51 removed = new ArrayList<QW>();
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52 }
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53
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54 public Fitting(Function function) {
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55 this(function, QW_FACTORY);
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56 }
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57
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58 public Fitting(Function function, QWFactory qwFactory) {
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59 this(function, qwFactory, false);
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60 }
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61
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62 public Fitting(
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63 Function function,
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64 QWFactory qwFactory,
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65 boolean checkOutliers
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66 ) {
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67 this();
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68 this.function = function;
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69 this.qwFactory = qwFactory;
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70 this.checkOutliers = checkOutliers;
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71 }
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72
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73 public Function getFunction() {
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74 return function;
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75 }
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76
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77 public void setFunction(Function function) {
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78 this.function = function;
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79 }
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80
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81 public boolean getCheckOutliers() {
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82 return checkOutliers;
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83 }
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84
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85 public void setCheckOutliers(boolean checkOutliers) {
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86 this.checkOutliers = checkOutliers;
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87 }
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88
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89 public double getChiSquare() {
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90 return chiSqr;
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91 }
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92
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93 public void reset() {
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94 chiSqr = 0.0;
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95 parameters = null;
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96 removed.clear();
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97 referenced = null;
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98 }
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99
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100 public boolean hasOutliers() {
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101 return !removed.isEmpty();
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102 }
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103
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104 public List<QW> getOutliers() {
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105 return removed;
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106 }
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107
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108 public QW [] outliersToArray() {
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109 return removed.toArray(new QW[removed.size()]);
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110 }
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111
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112 public QW [] referencedToArray() {
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113 return referenced != null ? (QW [])referenced.clone() : null;
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114 }
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115
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116 public double [] getParameters() {
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117 return parameters;
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118 }
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119
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120 public boolean fit(double [] qs, double [] ws) {
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121
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122 TDoubleArrayList xs = new TDoubleArrayList(qs.length);
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123 TDoubleArrayList ys = new TDoubleArrayList(ws.length);
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124
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125 for (int i = 0; i < qs.length; ++i) {
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126 if (!Double.isNaN(qs[i]) && !Double.isNaN(ws[i])) {
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127 xs.add(qs[i]);
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128 ys.add(ws[i]);
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129 }
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130 else {
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131 log.warn("remove invalid value " + qs[i] + " " + ws[i]);
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132 }
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133 }
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134
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135 if (xs.size() < 2) {
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136 return false;
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137 }
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138
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139 LevenbergMarquardtOptimizer lmo = new LevenbergMarquardtOptimizer();
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140
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141 List<IndexedValue> inputs = new ArrayList<IndexedValue>(xs.size());
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142
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143 for (;;) {
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144 CurveFitter cf = new CurveFitter(lmo);
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145
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146 for (int i = 0, N = xs.size(); i < N; ++i) {
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147 cf.addObservedPoint(xs.getQuick(i), ys.getQuick(i));
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148 }
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149
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150 try {
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151 parameters = cf.fit(function, function.getInitialGuess());
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152 }
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153 catch (MathException me) {
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154 log.warn(me);
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155 return false;
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156 }
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157
3022
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158 if (!checkOutliers) {
3011
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159 break;
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160 }
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161
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162 inputs.clear();
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163
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164 // This is the paraterized function for a given km.
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165 de.intevation.flys.artifacts.math.Function instance =
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166 function.instantiate(parameters);
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167
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168 for (int i = 0, N = xs.size(); i < N; ++i) {
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169 double y = instance.value(xs.getQuick(i));
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170 if (Double.isNaN(y)) {
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171 continue;
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172 }
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173 inputs.add(new IndexedValue(i, ys.getQuick(i) - y));
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174 }
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175
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176 Outliers outliers = Outlier.findOutliers(inputs);
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177
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178 if (!outliers.hasOutliers()) {
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179 break;
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180 }
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181
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182 List<IndexedValue> rem = outliers.getRemoved();
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183
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184 for (int i = rem.size()-1; i >= 0; --i) {
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185 int idx = rem.get(i).getIndex();
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186 removed.add(
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187 qwFactory.create(
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188 xs.getQuick(idx), ys.getQuick(idx)));
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189 xs.remove(idx);
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190 ys.remove(idx);
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191 }
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192 }
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193
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194 referenced = new QW[xs.size()];
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195 for (int i = 0; i < referenced.length; ++i) {
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196 referenced[i] = qwFactory.create(xs.getQuick(i), ys.getQuick(i));
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197 }
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198
3011
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199 chiSqr = lmo.getChiSquare();
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200
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201 return true;
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202 }
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203 }
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204 // vim:set ts=4 sw=4 si et sta sts=4 fenc=utf8 :
http://dive4elements.wald.intevation.org