Mercurial > dive4elements > river
changeset 4795:8ee270a3ef25
Small code cleanups in S/Q outlier tests.
author | Sascha L. Teichmann <teichmann@intevation.de> |
---|---|
date | Fri, 11 Jan 2013 22:16:22 +0100 |
parents | a7d080347ac3 |
children | 729a5edb0313 |
files | flys-artifacts/src/main/java/de/intevation/flys/artifacts/math/StdDevOutlier.java flys-artifacts/src/main/java/de/intevation/flys/artifacts/model/sq/Outlier.java |
diffstat | 2 files changed, 44 insertions(+), 40 deletions(-) [+] |
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--- a/flys-artifacts/src/main/java/de/intevation/flys/artifacts/math/StdDevOutlier.java Fri Jan 11 13:57:38 2013 +0100 +++ b/flys-artifacts/src/main/java/de/intevation/flys/artifacts/math/StdDevOutlier.java Fri Jan 11 22:16:22 2013 +0100 @@ -2,21 +2,12 @@ import java.util.List; -import org.apache.commons.math.MathException; - -import org.apache.commons.math.distribution.TDistributionImpl; - -import org.apache.commons.math.stat.descriptive.moment.Mean; import org.apache.commons.math.stat.descriptive.moment.StandardDeviation; import org.apache.log4j.Logger; -import de.intevation.flys.artifacts.model.sq.SQ; - public class StdDevOutlier { - public static final double EPSILON = 1e-5; - public static final double DEFAULT_FACTOR = 3; private static Logger log = Logger.getLogger(StdDevOutlier.class); @@ -28,7 +19,11 @@ return findOutlier(values, DEFAULT_FACTOR, null); } - public static Integer findOutlier(List<Double> values, double factor, double[] stdDevResult) { + public static Integer findOutlier( + List<Double> values, + double factor, + double [] stdDevResult + ) { boolean debug = log.isDebugEnabled(); if (debug) { @@ -41,7 +36,7 @@ log.debug("Values to check: " + N); } - if (values.size() < 3) { + if (N < 3) { return null; } @@ -49,15 +44,13 @@ double maxValue = -Double.MAX_VALUE; int maxIndex = -1; - int ndx = 0; - for (int i = values.size()-1; i >= 0; --i) { + for (int i = N-1; i >= 0; --i) { double value = Math.abs(values.get(i)); stdDev.increment(value); if (value > maxValue) { maxValue = value; - maxIndex = ndx; + maxIndex = i; } - ++ndx; } double sd = stdDev.getResult(); @@ -69,9 +62,11 @@ log.debug("accepted: " + accepted); log.debug("max value: " + maxValue); } + if (stdDevResult != null) { stdDevResult[0] = sd; } + return maxValue > accepted ? maxIndex : null; } }
--- a/flys-artifacts/src/main/java/de/intevation/flys/artifacts/model/sq/Outlier.java Fri Jan 11 13:57:38 2013 +0100 +++ b/flys-artifacts/src/main/java/de/intevation/flys/artifacts/model/sq/Outlier.java Fri Jan 11 22:16:22 2013 +0100 @@ -1,20 +1,17 @@ package de.intevation.flys.artifacts.model.sq; +import de.intevation.artifacts.common.utils.Config; + +import de.intevation.flys.artifacts.math.GrubbsOutlier; +import de.intevation.flys.artifacts.math.StdDevOutlier; + import java.util.ArrayList; import java.util.List; import org.apache.commons.math.MathException; -import org.apache.commons.math.stat.descriptive.moment.StandardDeviation; - import org.apache.log4j.Logger; -import de.intevation.artifacts.GlobalContext; -import de.intevation.artifacts.common.utils.Config; -import de.intevation.flys.artifacts.context.FLYSContext; -import de.intevation.flys.artifacts.math.GrubbsOutlier; -import de.intevation.flys.artifacts.math.StdDevOutlier; - public class Outlier { private static Logger log = Logger.getLogger(Outlier.class); @@ -24,7 +21,7 @@ private static final String GRUBBS = "grubbs"; - private static final String STD_DEV = "std-dev"; + //private static final String STD_DEV = "std-dev"; public interface Callback { @@ -48,42 +45,54 @@ { boolean debug = log.isDebugEnabled(); - if (debug) { - log.debug("stdDevFactor: " + stdDevFactor); - } String method = Config.getStringXPath(OUTLIER_METHOD); - log.debug("method: " + method); + if (method == null) { method = "std-dev"; } + + if (debug) { + log.debug("stdDevFactor: " + stdDevFactor); + log.debug("method: " + method); + } + List<SQ> data = new ArrayList<SQ>(sqs); + double [] stdDev = new double[1]; + + boolean useGrubbs = method.equals(GRUBBS); + + if (useGrubbs) { + stdDevFactor = Math.max(0d, Math.min(stdDevFactor/100d, 1d)); + } + + List<Double> values = new ArrayList<Double>(data.size()); + while (data.size() > 2) { callback.initialize(data); - List<Double> values = new ArrayList<Double>(); for (SQ sq: data) { values.add(callback.eval(sq)); } - Integer ndx = null; - double[] stdDev = new double[1]; - if (method.equals(GRUBBS)) { - ndx = GrubbsOutlier.findOutlier(values, stdDevFactor/100, stdDev); - } - else { - ndx = StdDevOutlier.findOutlier(values, stdDevFactor, stdDev); - } + Integer ndx = useGrubbs + ? GrubbsOutlier.findOutlier(values, stdDevFactor, stdDev) + : StdDevOutlier.findOutlier(values, stdDevFactor, stdDev); + if (ndx == null) { callback.iterationFinished(stdDev[0], null, data); break; } - SQ outlier = data.remove((int)ndx); - log.debug("stdDev: " + stdDev[0]); - log.debug("removed " + ndx + "; S: " + outlier.getS() + " Q: " + outlier.getQ()); + SQ outlier = data.remove(ndx.intValue()); + if (debug) { + log.debug("stdDev: " + stdDev[0]); + log.debug("removed " + ndx + + "; S: " + outlier.getS() + " Q: " + outlier.getQ()); + } callback.iterationFinished(stdDev[0], outlier, data); + values.clear(); } } }