Mercurial > dive4elements > river

annotate backend/src/main/java/org/dive4elements/river/importer/parsers/AbstractSedimentLoadParser.java @ 9726:0a5239a1e46e 3.2.x

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Upgrade to Log4j 2
author Tom Gottfried <tom@intevation.de>
date Wed, 02 Mar 2022 10:26:50 +0100
parents 5e38e2924c07
children
rev   line source
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bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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1 /* Copyright (C) 2011, 2012, 2013 by Bundesanstalt für Gewässerkunde
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2 * Software engineering by Intevation GmbH
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3 *
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4 * This file is Free Software under the GNU AGPL (>=v3)
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5 * and comes with ABSOLUTELY NO WARRANTY! Check out the
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6 * documentation coming with Dive4Elements River for details.
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7 */
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bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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9 package org.dive4elements.river.importer.parsers;
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bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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11 import java.io.File;
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12 import java.io.IOException;
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bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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14 import java.text.NumberFormat;
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15 import java.text.ParseException;
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bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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17 import java.util.regex.Matcher;
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18 import java.util.regex.Pattern;
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19
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20 import org.apache.logging.log4j.Logger;
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21 import org.apache.logging.log4j.LogManager;
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bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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23 import org.dive4elements.river.importer.ImporterSession;
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24 import org.dive4elements.river.importer.ImportGrainFraction;
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25 import org.dive4elements.river.importer.ImportTimeInterval;
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bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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27 import org.dive4elements.river.model.GrainFraction;
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28
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29 import org.dive4elements.river.backend.utils.DateUtil;
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30 import org.dive4elements.river.backend.utils.EpsilonComparator;
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32 /** Parses sediment load files. */
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33 public abstract class AbstractSedimentLoadParser extends LineParser {
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35 private static final Logger log =
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36 LogManager.getLogger(AbstractSedimentLoadParser.class);
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bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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38
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39 public static final NumberFormat nf = NumberFormat.getInstance(
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40 DEFAULT_LOCALE);
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43 public static final Pattern TIMEINTERVAL_SINGLE =
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44 Pattern.compile("\\D*([0-9]+?)\\D*");
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bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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46 public static final Pattern TIMEINTERVAL_EPOCH =
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47 Pattern.compile("\\D*([0-9]+?)\\s*-\\s*([0-9]+?)\\D*");
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49 public static final Pattern META_FRACTION =
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50 Pattern.compile("^Fraktion: (.*)");
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52 public static final Pattern META_FRACTION_NAME =
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53 Pattern.compile("^Fraktionsname: (.*)");
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54
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55 public static final Pattern META_SQ_TIMEINTERVAL =
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56 Pattern.compile("^S-Q-Beziehung: (.*)");
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57
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58 public static final Pattern META_COLUMN_NAMES =
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59 Pattern.compile("^Fluss-km.*");
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61 public static final Pattern META_GRAIN_SIZE =
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62 Pattern.compile("([0-9]*,*[0-9]+)-([0-9]*,*[0-9]+) *mm");
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63
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64
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65 protected abstract void handleDataLine(String line);
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67 /** Initialize SedimentLoadLSs from columns, set the kind
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68 * with respect to file location (offical epoch or not?) */
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69 protected abstract void initializeSedimentLoads();
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70
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71 protected abstract void handleMetaLine(String line)
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72 throws LineParserException;
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73
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75 protected ImportGrainFraction grainFraction;
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76
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77 protected ImportTimeInterval sqTimeInterval;
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78
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79 protected String description;
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81 protected String[] columnNames;
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83 private String upper;
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85 private String lower;
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88 @Override
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89 public void parse(File file) throws IOException {
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90 description = file.getName();
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92 super.parse(file);
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93 }
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96 @Override
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97 protected void handleLine(int lineNum, String line)
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98 throws LineParserException {
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99 if (line.startsWith(START_META_CHAR)) {
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100 handleMetaLine(stripMetaLine(line));
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101 }
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102 else {
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103 handleDataLine(line);
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104 }
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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105 }
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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106
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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107
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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108 public boolean handleMetaFraction(String line) {
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109 Matcher m = META_FRACTION.matcher(line);
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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110
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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111 if (m.matches()) {
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112 String interval = m.group(1);
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113
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
Tom Gottfried <tom@intevation.de>
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114 Matcher sizes = META_GRAIN_SIZE.matcher(interval);
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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115 if (sizes.matches()) {
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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116 lower = sizes.group(1);
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117 upper = sizes.group(2);
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118
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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119 return true;
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120 }
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121
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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122 log.warn("ASLP: Unrecognized grain-size interval. Ignored.");
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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123 return true;
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124
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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125 }
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126
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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127 return false;
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128 }
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129
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130
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131 public boolean handleMetaFractionName(String line)
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132 throws LineParserException {
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bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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133 Matcher m = META_FRACTION_NAME.matcher(line);
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134
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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135 if (m.matches()) {
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
Tom Gottfried <tom@intevation.de>
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136 String name = m.group(1);
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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137
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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138
8856
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diff changeset
139 GrainFraction gf = ImporterSession.getInstance()
5e38e2924c07 Fix code style.
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140 .getGrainFraction(name);
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bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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141
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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142 if (gf != null) {
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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143
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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144 if (lower != null && upper != null) {
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
Tom Gottfried <tom@intevation.de>
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145 // Validate grain size interval
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
Tom Gottfried <tom@intevation.de>
parents:
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146 try {
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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147 Double lowval = nf.parse(lower).doubleValue();
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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148 Double upval = nf.parse(upper).doubleValue();
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149
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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150 if (EpsilonComparator.CMP.compare(lowval,
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diff changeset
151 gf.getLower()) != 0 ||
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
Tom Gottfried <tom@intevation.de>
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diff changeset
152 EpsilonComparator.CMP.compare(upval,
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Tom Gottfried <tom@intevation.de>
parents:
diff changeset
153 gf.getUpper()) != 0) {
8856
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diff changeset
154 log.warn(
5e38e2924c07 Fix code style.
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parents: 8491
diff changeset
155 "ASLP: Invalid grain size for grain fraction '"
5e38e2924c07 Fix code style.
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parents: 8491
diff changeset
156 + name + "'. Ignored.");
8043
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157 }
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parents:
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158 }
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
Tom Gottfried <tom@intevation.de>
parents:
diff changeset
159 catch (ParseException pe) {
8856
5e38e2924c07 Fix code style.
Tom Gottfried <tom@intevation.de>
parents: 8491
diff changeset
160 log.warn("ASLP: Could not parse grain-size interval. "
5e38e2924c07 Fix code style.
Tom Gottfried <tom@intevation.de>
parents: 8491
diff changeset
161 + "Ignored.");
8043
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
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diff changeset
162 }
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
Tom Gottfried <tom@intevation.de>
parents:
diff changeset
163 }
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
Tom Gottfried <tom@intevation.de>
parents:
diff changeset
164
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
Tom Gottfried <tom@intevation.de>
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165 grainFraction = new ImportGrainFraction(gf);
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
Tom Gottfried <tom@intevation.de>
parents:
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166 return true;
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Tom Gottfried <tom@intevation.de>
parents:
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167 }
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
Tom Gottfried <tom@intevation.de>
parents:
diff changeset
168
8491
7bc675e4e6e0 Remove trailing whitespace.
Sascha L. Teichmann <teichmann@intevation.de>
parents: 8187
diff changeset
169 throw new LineParserException("ASLP: Unknown grain fraction: '" +
8043
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
Tom Gottfried <tom@intevation.de>
parents:
diff changeset
170 name + "'");
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
Tom Gottfried <tom@intevation.de>
parents:
diff changeset
171 }
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
Tom Gottfried <tom@intevation.de>
parents:
diff changeset
172
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
Tom Gottfried <tom@intevation.de>
parents:
diff changeset
173 return false;
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Tom Gottfried <tom@intevation.de>
parents:
diff changeset
174 }
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
Tom Gottfried <tom@intevation.de>
parents:
diff changeset
175
bd0dea643440 Divide SedimentLoadLSParser into AbstractSedimentLoadParser and SedimentLoadLSParser to be able to reuse code for a new SedimentLoadParser for data at measurement stations.
Tom Gottfried <tom@intevation.de>
parents:
diff changeset
176
8059
bde5f5ec7c72 SCHEMA CHANGE and Importer: get time intervals of SQ-relations from metalines in sediment load files.
Tom Gottfried <tom@intevation.de>
parents: 8056
diff changeset
177 public boolean handleMetaSQTimeInterval(String line) {
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Tom Gottfried <tom@intevation.de>
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diff changeset
178 Matcher m = META_SQ_TIMEINTERVAL.matcher(line);
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Tom Gottfried <tom@intevation.de>
parents: 8056
diff changeset
179
bde5f5ec7c72 SCHEMA CHANGE and Importer: get time intervals of SQ-relations from metalines in sediment load files.
Tom Gottfried <tom@intevation.de>
parents: 8056
diff changeset
180 if (m.matches()) {
bde5f5ec7c72 SCHEMA CHANGE and Importer: get time intervals of SQ-relations from metalines in sediment load files.
Tom Gottfried <tom@intevation.de>
parents: 8056
diff changeset
181 String interval = m.group(1);
bde5f5ec7c72 SCHEMA CHANGE and Importer: get time intervals of SQ-relations from metalines in sediment load files.
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diff changeset
182
bde5f5ec7c72 SCHEMA CHANGE and Importer: get time intervals of SQ-relations from metalines in sediment load files.
Tom Gottfried <tom@intevation.de>
parents: 8056
diff changeset
183 try {
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Tom Gottfried <tom@intevation.de>
parents: 8056
diff changeset
184 Matcher a = TIMEINTERVAL_EPOCH.matcher(interval);
bde5f5ec7c72 SCHEMA CHANGE and Importer: get time intervals of SQ-relations from metalines in sediment load files.
Tom Gottfried <tom@intevation.de>
parents: 8056
diff changeset
185 if (a.matches()) {
bde5f5ec7c72 SCHEMA CHANGE and Importer: get time intervals of SQ-relations from metalines in sediment load files.
Tom Gottfried <tom@intevation.de>
parents: 8056
diff changeset
186 int yearA = nf.parse(a.group(1)).intValue();
bde5f5ec7c72 SCHEMA CHANGE and Importer: get time intervals of SQ-relations from metalines in sediment load files.
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parents: 8056
diff changeset
187 int yearB = nf.parse(a.group(2)).intValue();
bde5f5ec7c72 SCHEMA CHANGE and Importer: get time intervals of SQ-relations from metalines in sediment load files.
Tom Gottfried <tom@intevation.de>
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diff changeset
188
bde5f5ec7c72 SCHEMA CHANGE and Importer: get time intervals of SQ-relations from metalines in sediment load files.
Tom Gottfried <tom@intevation.de>
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diff changeset
189 sqTimeInterval = new ImportTimeInterval(
bde5f5ec7c72 SCHEMA CHANGE and Importer: get time intervals of SQ-relations from metalines in sediment load files.
Tom Gottfried <tom@intevation.de>
parents: 8056
diff changeset
190 DateUtil.getStartDateFromYear(yearA),
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parents: 8056
diff changeset
191 DateUtil.getEndDateFromYear(yearB)
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Tom Gottfried <tom@intevation.de>
parents: 8056
diff changeset
192 );
bde5f5ec7c72 SCHEMA CHANGE and Importer: get time intervals of SQ-relations from metalines in sediment load files.
Tom Gottfried <tom@intevation.de>
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diff changeset
193 }
bde5f5ec7c72 SCHEMA CHANGE and Importer: get time intervals of SQ-relations from metalines in sediment load files.
Tom Gottfried <tom@intevation.de>
parents: 8056
diff changeset
194 else {
bde5f5ec7c72 SCHEMA CHANGE and Importer: get time intervals of SQ-relations from metalines in sediment load files.
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diff changeset
195 log.warn("ASLP: Unknown SQ-time string: '" + interval +
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diff changeset
196 "'. Ignored.");
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Tom Gottfried <tom@intevation.de>
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diff changeset
197 }
bde5f5ec7c72 SCHEMA CHANGE and Importer: get time intervals of SQ-relations from metalines in sediment load files.
Tom Gottfried <tom@intevation.de>
parents: 8056
diff changeset
198 }
bde5f5ec7c72 SCHEMA CHANGE and Importer: get time intervals of SQ-relations from metalines in sediment load files.
Tom Gottfried <tom@intevation.de>
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diff changeset
199 catch (ParseException pe) {
bde5f5ec7c72 SCHEMA CHANGE and Importer: get time intervals of SQ-relations from metalines in sediment load files.
Tom Gottfried <tom@intevation.de>
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diff changeset
200 log.error("ASLP: Could not parse SQ-time string: '" +
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Tom Gottfried <tom@intevation.de>
parents: 8056
diff changeset
201 interval + "'. Ignored.", pe);
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Tom Gottfried <tom@intevation.de>
parents: 8056
diff changeset
202 }
bde5f5ec7c72 SCHEMA CHANGE and Importer: get time intervals of SQ-relations from metalines in sediment load files.
Tom Gottfried <tom@intevation.de>
parents: 8056
diff changeset
203
bde5f5ec7c72 SCHEMA CHANGE and Importer: get time intervals of SQ-relations from metalines in sediment load files.
Tom Gottfried <tom@intevation.de>
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diff changeset
204 return true;
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diff changeset
205
bde5f5ec7c72 SCHEMA CHANGE and Importer: get time intervals of SQ-relations from metalines in sediment load files.
Tom Gottfried <tom@intevation.de>
parents: 8056
diff changeset
206 }
bde5f5ec7c72 SCHEMA CHANGE and Importer: get time intervals of SQ-relations from metalines in sediment load files.
Tom Gottfried <tom@intevation.de>
parents: 8056
diff changeset
207
bde5f5ec7c72 SCHEMA CHANGE and Importer: get time intervals of SQ-relations from metalines in sediment load files.
Tom Gottfried <tom@intevation.de>
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diff changeset
208 return false;
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diff changeset
209 }
bde5f5ec7c72 SCHEMA CHANGE and Importer: get time intervals of SQ-relations from metalines in sediment load files.
Tom Gottfried <tom@intevation.de>
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diff changeset
210
bde5f5ec7c72 SCHEMA CHANGE and Importer: get time intervals of SQ-relations from metalines in sediment load files.
Tom Gottfried <tom@intevation.de>
parents: 8056
diff changeset
211
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212 public boolean handleColumnNames(String line) throws LineParserException {
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213 Matcher m = META_COLUMN_NAMES.matcher(line);
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214
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215 if (m.matches()) {
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216 columnNames = line.split(SEPERATOR_CHAR);
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217
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218 // 'Fluss-km', 'Hinweise' and at least one data column required
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219 if (columnNames.length < 3) {
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220 throw new LineParserException("ASLP: missing columns in '" +
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221 line + "'");
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222 }
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223
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224 initializeSedimentLoads();
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225
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226 return true;
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227 }
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228
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229 return false;
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230 }
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231
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232
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233 protected ImportTimeInterval getTimeInterval(String column) {
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234 try {
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235 Matcher a = TIMEINTERVAL_EPOCH.matcher(column);
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236 if (a.matches()) {
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237 int yearA = nf.parse(a.group(1)).intValue();
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238 int yearB = nf.parse(a.group(2)).intValue();
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239
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240 return new ImportTimeInterval(
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241 DateUtil.getStartDateFromYear(yearA),
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242 DateUtil.getEndDateFromYear(yearB)
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243 );
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244 }
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245
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246 Matcher b = TIMEINTERVAL_SINGLE.matcher(column);
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247 if (b.matches()) {
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248 int year = nf.parse(b.group(1)).intValue();
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249
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250 return new ImportTimeInterval(
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251 DateUtil.getStartDateFromYear(year));
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252 }
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253
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254 log.warn("ASLP: Unknown time interval string: '" + column + "'");
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255 }
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256 catch (ParseException pe) {
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257 log.warn("ASLP: Could not parse years: " + column, pe);
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258 }
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259
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260 return null;
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261 }
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262
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263 }
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264 // vim:set ts=4 sw=4 si et sta sts=4 fenc=utf8 :
http://dive4elements.wald.intevation.org