Mercurial > dive4elements > river

annotate backend/contrib/import_river.sh @ 8560:6fcf4717605f

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Meta-data on sounding width associated to bed heights is redundant to real data associated to values.
author "Tom Gottfried <tom@intevation.de>"
date Mon, 16 Feb 2015 11:48:05 +0100
parents d86cc6a17b7a
children 44ba71b0b75a
rev   line source
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1 #!/bin/bash
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2 # Import script for rivers
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3 #
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4 # Authors:
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5 # Andre Heinecke <aheinecke@intevation.de>
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6 #
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7 # Copyright:
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8 # Copyright (C) 2013 Intevation GmbH
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9 #
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10 # This program is free software; you can redistribute it and/or
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11 # modify it under the terms of the GNU General Public License
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12 # as published by the Free Software Foundation; either version 2
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13 # of the License, or (at your option) any later version.
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14 #
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15 # This program is distributed in the hope that it will be useful,
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16 # but WITHOUT ANY WARRANTY; without even the implied warranty of
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17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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18 # GNU General Public License for more details.
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19 #
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20 # You should have received a copy of the GNU General Public License
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21 # along with this program; if not, write to the Free Software
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22 # Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
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23
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24 set -e
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25
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26 # Default settings
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27 DEFAULT_HOST=localhost
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28 DEFAULT_PORT=1521
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29 DEFAULT_USER=flys_dami
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30 DEFAULT_PASS=flys_dami
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31 DEFAULT_LOG=$PWD/logs
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32 DEFAULT_BACKEND_NAME="XE"
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33 JAR="hydr_morph/importer.jar"
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34 IMPORTER_DRY_RUN=false
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35 IMPORTER_MAINVALUE_TYPES=QWTD-
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36 IMPORTER_ANNOTATION_TYPES="conf/annotation-types.xml"
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37
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38
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39 MIN_MEMORY="8024m"
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40
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41 # Default encoding. Change here if necessary
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42 export LC_ALL=de_DE@euro
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43
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44 if [ -z "$OPTIONAL_LIBS" ]; then
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45 OPTIONAL_LIBS="$(dirname $0)/opt"
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46 fi
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47
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48 if [ -d "$OPTIONAL_LIBS" ]; then
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49 export PATH="$OPTIONAL_LIBS/bin:$PATH"
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50 export LD_LIBRARY_PATH="$OPTIONAL_LIBS/lib:$LD_LIBRARY_PATH"
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51 export LD_LIBRARY_PATH="$OPTIONAL_LIBS/lib64:$LD_LIBRARY_PATH"
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52 export PYTHONPATH="$OPTIONAL_LIBS/lib/python2.6/site-packages:$PYTHONPATH"
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53 export PYTHONPATH="$OPTIONAL_LIBS/lib64/python2.6/site-packages:$PYTHONPATH"
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54 export GDAL_DATA="$OPTIONAL_LIBS/share/gdal"
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55 fi
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56
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57 usage(){
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58 cat << EOF
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59
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60 usage: $0 [options] gew_file
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61
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62 Import a river described by the gew_file
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63
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64 OPTIONS:
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65 -?, --help Show this message
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66 -u, --username=<username> Database username. Default: $DEFAULT_USER
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67 -w, --password=<password> Database password. Default: $DEFAULT_PASS
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68 -h, --host=<host> Connect to database on host <host>.
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69 Default: $DEFAULT_HOST
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70 -p, --port=<number> Use port number <number>. Default: $DEFAULT_PORT
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71 -d, --db-name=<database_name> Name of the database / backend. Default: $DEFAULT_BACKEND_NAME
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72 -l, --log-dir=<directory> Directory in which to create the log files.
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73 Default: $PWD/logs
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74 --postgres Database is PostgreSQL
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75 --skip-hydro Skip import of hydrological data
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76 --skip-morpho Skip import of morphological data
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77 --skip-geo Skip import of geographic data
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78 --skip-prf Skip import of cross section data
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79 EOF
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80 exit 0
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81 }
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82
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83 OPTS=`getopt -o ?u:w:h:p:d:l: \
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84 -l help,username:,password:,host:,port:,db-name:,log-dir:,skip-hydro,skip-morpho,skip-geo,skip-prf,postgres \
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85 -n $0 -- "$@"`
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86 if [ $? != 0 ] ; then usage; fi
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87 eval set -- "$OPTS"
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88 while true ; do
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89 case "$1" in
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90 "-?"|"--help")
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91 usage;;
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92 "--")
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93 shift
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94 break;;
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95 "-u"|"--username")
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96 DBUSER=$2
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97 shift 2;;
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98 "-w"|"--password")
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99 DBPASS=$2
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100 shift 2;;
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101 "-h"|"--host")
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102 DBHOST=$2
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103 shift 2;;
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104 "-p"|"--port")
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105 DBPORT=$2
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106 shift 2;;
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107 "-l"|"--log-dir")
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108 LOG=$2
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109 shift 2;;
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110 "-d"|"--db-name")
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111 BACKEND_NAME=$2
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112 shift 2;;
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113 "--skip-hydro")
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114 SKIP_HYDRO="TRUE"
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115 shift;;
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116 "--skip-morpho")
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117 SKIP_MORPHO="TRUE"
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118 shift;;
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119 "--skip-prf")
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120 SKIP_PRF="TRUE"
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121 shift;;
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122 "--skip-geo")
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123 SKIP_GEO="TRUE"
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124 shift;;
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125 "--postgres")
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126 POSTGRES="TRUE"
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127 shift;;
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128 *)
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129 echo "Unknown Option $1"
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130 usage;;
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131 esac
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132 done
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133
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134 if [ -z $DBUSER ]; then
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135 DBUSER=$DEFAULT_USER
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136 fi
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137 if [ -z $DBPASS ]; then
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138 DBPASS=$DEFAULT_PASS
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139 fi
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140 if [ -z $DBPORT ]; then
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141 DBPORT=$DEFAULT_PORT
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142 fi
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143 if [ -z $DBHOST ]; then
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144 DBHOST=$DEFAULT_HOST
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145 fi
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146 if [ -z $BACKEND_NAME ]; then
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147 BACKEND_NAME=$DEFAULT_BACKEND_NAME
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148 fi
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149 if [ -z $LOG ]; then
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150 LOG=$DEFAULT_LOG
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151 fi
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152
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153 if [ $# != 1 ]; then
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154 usage
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155 fi
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156
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157 if [ ! -r $1 ]; then
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158 echo "Could not open $1 please ensure it exists and is readable"
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159 fi
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160
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161 GEW_FILE="$1"
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162 RIVER_NAME=$(grep "Gew.sser" "$1" | sed 's/Gew.sser: //')
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163 DATE=$(date +%Y.%m.%d_%H%M)
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164 LOG_DIR=${LOG}/`basename $GEW_FILE .gew`-$DATE
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165 mkdir -p ${LOG_DIR}
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166
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167 cat > "$LOG_DIR/log4j.properties" << "EOF"
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168 log4j.rootLogger=DEBUG, IMPORTER
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169 log4j.appender.IMPORTER.layout=org.apache.log4j.PatternLayout
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170 log4j.appender.IMPORTER.layout.ConversionPattern=%d [%t] %-5p %c - %m%n
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171 log4j.appender.IMPORTER=org.apache.log4j.RollingFileAppender
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172 log4j.appender.IMPORTER.File=./import.log
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173 log4j.appender.IMPORTER.MaxFileSize=100000KB
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174 log4j.appender.IMPORTER.MaxBackupIndex=10
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175 EOF
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176
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480d2f1f61cc Fix import_rivers script for postgres
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177 if [ "$POSTGRES" = "TRUE" ]; then
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178 JAR=$(echo "$JAR" | sed 's/importer/importer_psql/')
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179 if [ ! -r "$JAR" ]; then
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180 echo "Could not find Postgres importer $JAR"
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181 exit 1
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182 fi
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183 OGR_CONNECTION="PG:dbname=$BACKEND_NAME host=$DBHOST port=$DBPORT \
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184 user=$DBUSER password=$DBPASS"
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185 BACKEND_DB_PREFIX="jdbc:postgresql:"
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186 BACKEND_DB_DRIVER="org.postgresql.Driver"
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187 BACKEND_DB_DIALECT="org.hibernate.dialect.PostgreSQLDialect"
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188 else
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189 BACKEND_DB_PREFIX="jdbc:oracle:thin:@"
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190 BACKEND_DB_DRIVER="oracle.jdbc.OracleDriver"
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191 BACKEND_DB_DIALECT="org.hibernate.dialect.OracleDialect"
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192 fi
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193
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194 BACKEND_URL=$BACKEND_DB_PREFIX//$DBHOST:$DBPORT/$BACKEND_NAME
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195
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196 echo "Importing $RIVER_NAME into $BACKEND_URL."
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197
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198 import_hydro(){
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199 LOG_FILE=${LOG_DIR}/hydro.log
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200 echo Importing Hydrological data.
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201 echo Logging into: $LOG_FILE
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202 sed -i 's!\(log4j.appender.IMPORTER.File=\).*!\1'"$LOG_FILE"'!' \
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203 $LOG_DIR/log4j.properties
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204 java -jar \
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205 -Xmx$MIN_MEMORY \
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206 -server \
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207 -Dlog4j.configuration=file://$LOG_DIR/log4j.properties \
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208 -Dflys.backend.user=$DBUSER \
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209 -Dflys.backend.password=$DBPASS \
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210 -Dflys.backend.url=$BACKEND_URL \
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211 -Dflys.backend.driver=$BACKEND_DB_DRIVER \
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diff changeset
212 -Dflys.backend.dialect=$BACKEND_DB_DIALECT \
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213 -Dflys.backend.importer.infogew.file="$GEW_FILE" \
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214 -Dflys.backend.main.value.types=$IMPORTER_MAINVALUE_TYPES \
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215 -Dflys.backend.importer.annotation.types=$IMPORTER_ANNOTATION_TYPES \
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216 -Dflys.backend.importer.dry.run=$IMPORTER_DRY_RUN \
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217 -Dflys.backend.importer.skip.annotations=false \
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218 -Dflys.backend.importer.skip.bwastr=false \
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219 -Dflys.backend.importer.skip.extra.wsts=false \
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220 -Dflys.backend.importer.skip.fixations=false \
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221 -Dflys.backend.importer.skip.flood.water=false \
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222 -Dflys.backend.importer.skip.flood.protection=false \
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223 -Dflys.backend.importer.skip.gauges=false \
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5e621410db05 Importer: skip historical discharge tables per default as they come via ETL.
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diff changeset
224 -Dflys.backend.importer.skip.historical.discharge.tables=true \
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225 -Dflys.backend.importer.skip.hyks=false \
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diff changeset
226 -Dflys.backend.importer.skip.official.lines=false \
6825
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parents: 6706
diff changeset
227 -Dflys.backend.importer.skip.prfs=true \
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parents: 6706
diff changeset
228 -Dflys.backend.importer.skip.w80s=true \
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diff changeset
229 -Dflys.backend.importer.skip.w80.csvs=true \
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diff changeset
230 -Dflys.backend.importer.skip.da50s=true \
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parents: 6706
diff changeset
231 -Dflys.backend.importer.skip.da66s=true \
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parents: 6706
diff changeset
232 -Dflys.backend.importer.skip.wst=false \
6417
14b5674e57a4 Importer: add skip flag for measurement stations to scripts
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parents: 5838
diff changeset
233 -Dflys.backend.importer.skip.measurement.stations=true \
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234 -Dflys.backend.importer.skip.waterlevel.differences=true \
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diff changeset
235 -Dflys.backend.importer.skip.waterlevels=true \
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diff changeset
236 -Dflys.backend.importer.skip.sq.relation=true \
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diff changeset
237 -Dflys.backend.importer.skip.sediment.density=true \
8056
d86cc6a17b7a Importer: Import sediment load at measurement stations.
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parents: 8032
diff changeset
238 -Dflys.backend.importer.skip.sediment.load=true \
8032
fd3a24336e6a SCHEMA CHANGE and Importer (only longitudinal section data so far): only grain fractions given now in schema are valid. We are handling sediment loads, not yields.
"Tom Gottfried <tom@intevation.de>"
parents: 7925
diff changeset
239 -Dflys.backend.importer.skip.sediment.load.ls=true \
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240 -Dflys.backend.importer.skip.morphological.width=true \
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parents:
diff changeset
241 -Dflys.backend.importer.skip.flow.velocity=true \
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parents:
diff changeset
242 -Dflys.backend.importer.skip.bed.height.single=true \
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diff changeset
243 $JAR
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244 }
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245
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246 import_morpho(){
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247 LOG_FILE=${LOG_DIR}/morpho.log
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248 echo Importing Morphological data.
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diff changeset
249 echo Logging into: $LOG_FILE
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250 sed -i 's!\(log4j.appender.IMPORTER.File=\).*!\1'"$LOG_FILE"'!' \
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diff changeset
251 $LOG_DIR/log4j.properties
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diff changeset
252 java -jar \
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diff changeset
253 -Xmx$MIN_MEMORY \
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diff changeset
254 -server \
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diff changeset
255 -Dlog4j.configuration=file://$LOG_DIR/log4j.properties \
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diff changeset
256 -Dflys.backend.user=$DBUSER \
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257 -Dflys.backend.password=$DBPASS \
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258 -Dflys.backend.url=$BACKEND_URL \
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parents:
diff changeset
259 -Dflys.backend.driver=$BACKEND_DB_DRIVER \
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parents:
diff changeset
260 -Dflys.backend.dialect=$BACKEND_DB_DIALECT \
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261 -Dflys.backend.importer.infogew.file="$GEW_FILE" \
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parents:
diff changeset
262 -Dflys.backend.main.value.types=$IMPORTER_MAINVALUE_TYPES \
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parents:
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263 -Dflys.backend.importer.annotation.types=$IMPORTER_ANNOTATION_TYPES \
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parents:
diff changeset
264 -Dflys.backend.importer.dry.run=$IMPORTER_DRY_RUN \
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parents:
diff changeset
265 -Dflys.backend.importer.skip.annotations=true \
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parents:
diff changeset
266 -Dflys.backend.importer.skip.bwastr=true \
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parents:
diff changeset
267 -Dflys.backend.importer.skip.extra.wsts=true \
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parents:
diff changeset
268 -Dflys.backend.importer.skip.fixations=true \
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parents:
diff changeset
269 -Dflys.backend.importer.skip.flood.water=true \
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parents:
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270 -Dflys.backend.importer.skip.flood.protection=true \
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271 -Dflys.backend.importer.skip.gauges=true \
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parents:
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272 -Dflys.backend.importer.skip.historical.discharge.tables=true \
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273 -Dflys.backend.importer.skip.hyks=true \
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274 -Dflys.backend.importer.skip.official.lines=true \
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275 -Dflys.backend.importer.skip.prfs=true \
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276 -Dflys.backend.importer.skip.w80s=true \
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277 -Dflys.backend.importer.skip.w80.csvs=true \
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278 -Dflys.backend.importer.skip.da50s=true \
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279 -Dflys.backend.importer.skip.da66s=true \
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280 -Dflys.backend.importer.skip.wst=true \
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281 -Dflys.backend.importer.skip.measurement.stations=false \
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282 -Dflys.backend.importer.skip.waterlevel.differences=false \
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283 -Dflys.backend.importer.skip.waterlevels=false \
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284 -Dflys.backend.importer.skip.sq.relation=false \
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285 -Dflys.backend.importer.skip.sediment.density=false \
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d86cc6a17b7a Importer: Import sediment load at measurement stations.
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286 -Dflys.backend.importer.skip.sediment.load=false \
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fd3a24336e6a SCHEMA CHANGE and Importer (only longitudinal section data so far): only grain fractions given now in schema are valid. We are handling sediment loads, not yields.
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287 -Dflys.backend.importer.skip.sediment.load.ls=false \
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288 -Dflys.backend.importer.skip.morphological.width=false \
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289 -Dflys.backend.importer.skip.flow.velocity=false \
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290 -Dflys.backend.importer.skip.bed.height.single=false \
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291 $JAR
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292 }
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293
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294 import_prf(){
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295 LOG_FILE=${LOG_DIR}/prf.log
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296 echo Importing cross section data.
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297 echo Logging into: $LOG_FILE
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298 sed -i 's!\(log4j.appender.IMPORTER.File=\).*!\1'"$LOG_FILE"'!' \
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299 $LOG_DIR/log4j.properties
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300 java -jar \
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301 -Xmx$MIN_MEMORY \
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302 -server \
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303 -Dlog4j.configuration=file://$LOG_DIR/log4j.properties \
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304 -Dflys.backend.user=$DBUSER \
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305 -Dflys.backend.password=$DBPASS \
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306 -Dflys.backend.url=$BACKEND_URL \
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307 -Dflys.backend.driver=$BACKEND_DB_DRIVER \
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308 -Dflys.backend.dialect=$BACKEND_DB_DIALECT \
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309 -Dflys.backend.importer.infogew.file="$GEW_FILE" \
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310 -Dflys.backend.main.value.types=$IMPORTER_MAINVALUE_TYPES \
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311 -Dflys.backend.importer.annotation.types=$IMPORTER_ANNOTATION_TYPES \
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312 -Dflys.backend.importer.dry.run=$IMPORTER_DRY_RUN \
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313 -Dflys.backend.importer.skip.annotations=true \
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314 -Dflys.backend.importer.skip.bwastr=true \
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315 -Dflys.backend.importer.skip.extra.wsts=true \
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316 -Dflys.backend.importer.skip.fixations=true \
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317 -Dflys.backend.importer.skip.flood.water=true \
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318 -Dflys.backend.importer.skip.flood.protection=true \
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319 -Dflys.backend.importer.skip.gauges=true \
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320 -Dflys.backend.importer.skip.historical.discharge.tables=true \
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parents:
diff changeset
321 -Dflys.backend.importer.skip.hyks=true \
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diff changeset
322 -Dflys.backend.importer.skip.official.lines=true \
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323 -Dflys.backend.importer.skip.prfs=false \
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diff changeset
324 -Dflys.backend.importer.skip.w80s=false \
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diff changeset
325 -Dflys.backend.importer.skip.w80.csvs=false \
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diff changeset
326 -Dflys.backend.importer.skip.da50s=false \
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parents: 6706
diff changeset
327 -Dflys.backend.importer.skip.da66s=false \
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parents: 6706
diff changeset
328 -Dflys.backend.importer.skip.wst=true \
6417
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diff changeset
329 -Dflys.backend.importer.skip.measurement.stations=true \
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330 -Dflys.backend.importer.skip.waterlevel.differences=true \
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parents:
diff changeset
331 -Dflys.backend.importer.skip.waterlevels=true \
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parents:
diff changeset
332 -Dflys.backend.importer.skip.sq.relation=true \
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parents:
diff changeset
333 -Dflys.backend.importer.skip.sediment.density=true \
8056
d86cc6a17b7a Importer: Import sediment load at measurement stations.
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parents: 8032
diff changeset
334 -Dflys.backend.importer.skip.sediment.load=true \
8032
fd3a24336e6a SCHEMA CHANGE and Importer (only longitudinal section data so far): only grain fractions given now in schema are valid. We are handling sediment loads, not yields.
"Tom Gottfried <tom@intevation.de>"
parents: 7925
diff changeset
335 -Dflys.backend.importer.skip.sediment.load.ls=true \
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parents:
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336 -Dflys.backend.importer.skip.morphological.width=true \
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parents:
diff changeset
337 -Dflys.backend.importer.skip.flow.velocity=true \
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diff changeset
338 -Dflys.backend.importer.skip.bed.height.single=true \
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diff changeset
339 $JAR
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340 }
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341
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342 import_geo(){
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343 LOG_FILE=${LOG_DIR}/geo.log
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diff changeset
344 echo Importing Geographic data.
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345 echo Logging into: $LOG_FILE
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346
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diff changeset
347 RIVER_PATH=$(grep "WSTDatei:" "$GEW_FILE" | awk '{print $2}')
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diff changeset
348 RIVER_PATH=$(dirname "$RIVER_PATH")/../..
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diff changeset
349 RIVER_PATH=$(readlink -f "$RIVER_PATH")
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diff changeset
350
db1a000a21a9 Make OPTIONAL_LIBS overwritable and fix geo importer call
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diff changeset
351 exec python $(dirname $0)/geodaesie/shpimporter.py \
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parents:
diff changeset
352 --directory $RIVER_PATH \
5563
673f68bb19a4 Geo-importer: accept river names with white space
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diff changeset
353 --river_name "$RIVER_NAME" \
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diff changeset
354 --ogr_connection "$OGR_CONNECTION" \
6658
89f856e24d27 Importer scripts: shpimporter needs backend name to play with Oracle.
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parents: 6651
diff changeset
355 --host $DBHOST/$BACKEND_NAME \
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diff changeset
356 --user $DBUSER \
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diff changeset
357 --password $DBPASS \
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diff changeset
358 --verbose 1 \
db1a000a21a9 Make OPTIONAL_LIBS overwritable and fix geo importer call
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parents: 5168
diff changeset
359 > "$LOG_FILE" 2>&1
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diff changeset
360 }
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parents:
diff changeset
361
a0abb6787ab1 Add first version of import_river script
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parents:
diff changeset
362
a0abb6787ab1 Add first version of import_river script
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parents:
diff changeset
363 if [ "$SKIP_HYDRO" != "TRUE" ]; then
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parents:
diff changeset
364 import_hydro
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parents:
diff changeset
365 fi
6825
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parents: 6706
diff changeset
366 if [ "$SKIP_PRF" != "TRUE" ]; then
3aff1b00618a import_rivers.sh: skip cross sections instead of WST-file in first run.
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parents: 6706
diff changeset
367 import_prf
5167
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Andre Heinecke <aheinecke@intevation.de>
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diff changeset
368 fi
a0abb6787ab1 Add first version of import_river script
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parents:
diff changeset
369 if [ "$SKIP_MORPHO" != "TRUE" ]; then
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parents:
diff changeset
370 import_morpho
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parents:
diff changeset
371 fi
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parents:
diff changeset
372 if [ "$SKIP_GEO" != "TRUE" ]; then
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parents:
diff changeset
373 import_geo
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parents:
diff changeset
374 fi
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