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changeset 5167:a0abb6787ab1

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Add first version of import_river script
author Andre Heinecke <aheinecke@intevation.de>
date Mon, 04 Mar 2013 12:45:52 +0100
parents 8937dd130230
children 650f94ec3122
files flys-backend/contrib/import_river.sh
diffstat 1 files changed, 344 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/flys-backend/contrib/import_river.sh	Mon Mar 04 12:45:52 2013 +0100
@@ -0,0 +1,344 @@
+#!/bin/bash
+# Import script for rivers
+#
+# Authors:
+# Andre Heinecke <aheinecke@intevation.de>
+#
+# Copyright:
+# Copyright (C) 2012 Greenbone Networks GmbH
+#
+# This program is free software; you can redistribute it and/or
+# modify it under the terms of the GNU General Public License
+# as published by the Free Software Foundation; either version 2
+# of the License, or (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, write to the Free Software
+# Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA.
+
+set -e
+
+# Default settings
+DEFAULT_HOST=localhost
+DEFAULT_PORT=1521
+DEFAULT_USER=flys_dami
+DEFAULT_PASS=flys_dami
+DEFAULT_LOG=$PWD/logs
+DEFAULT_BACKEND_NAME="XE"
+JAR="hydr_morph/importer.jar"
+IMPORTER_DRY_RUN=false
+IMPORTER_MAINVALUE_TYPES=QWTD
+IMPORTER_ANNOTATION_TYPES="conf/annotation-types.xml"
+
+
+MIN_MEMORY="8024m"
+
+OPTIONAL_LIBS="${DIR}"/../opt
+if [ -d "$OPTIONAL_LIBS" ]; then
+    export PATH="$OPTIONAL_LIBS/bin:$PATH"
+    export LD_LIBRARY_PATH="$OPTIONAL_LIBS/lib:$LD_LIBRARY_PATH"
+    export LD_LIBRARY_PATH="$OPTIONAL_LIBS/lib64:$LD_LIBRARY_PATH"
+    export PYTHONPATH="$OPTIONAL_LIBS/lib/python2.6/site-packages:$PYTHONPATH"
+    export PYTHONPATH="$OPTIONAL_LIBS/lib64/python2.6/site-packages:$PYTHONPATH"
+    export GDAL_DATA="$OPTIONAL_LIBS/share/gdal"
+fi
+
+usage(){
+    cat << EOF
+
+usage: $0 [options] gew_file
+
+Import a river described by the gew_file
+
+OPTIONS:
+   -?, --help                      Show this message
+   -u, --username=<username>       Database username. Default: $DEFAULT_USER
+   -w, --password=<password>       Database password. Default: $DEFAULT_PASS
+   -h, --host=<host>               Connect to database on host <host>.
+                                   Default: $DEFAULT_HOST
+   -p, --port=<number>             Use port number <number>. Default: $DEFAULT_PORT
+   -d, --db-name=<database_name>   Name of the database / backend. Default: $DEFAULT_BACKEND_NAME
+   -l, --log-dir=<directory>       Directory in which to create the log files.
+                                   Default: $LOG_DIR
+   --postgres                      Database is PostgreSQL
+   --skip-hydro                    Skip import of hydrological data
+   --skip-morpho                   Skip import of morphological data
+   --skip-geo                      Skip import of geographic data
+   --skip-wst                      Skip import of wst data
+EOF
+exit 0
+}
+
+OPTS=`getopt -o ?u:w:h:p:d: \
+     -l help,username:,password:,host:,port:,db-name:,skip-hydro,skip-morpho,skip-geo,skip-wst \
+     -n $0 -- "$@"`
+if [ $? != 0 ] ; then usage; fi
+eval set -- "$OPTS"
+while true ; do
+  case "$1" in
+    "-?"|"--help")
+      usage;;
+    "--")
+      shift
+      break;;
+    "-u"|"--username")
+      USER=$2
+      shift 2;;
+    "-w"|"--password")
+      PASS=$2
+      shift 2;;
+    "-h"|"--host")
+      HOST=$2
+      shift 2;;
+    "-p"|"--port")
+      PORT=$2
+      shift 2;;
+    "-l"|"--log-dir")
+      LOG=$2
+      shift 2;;
+    "-d"|"--db-name")
+      BACKEND_NAME=$2
+      shift 2;;
+    "--skip-hydro")
+      SKIP_HYDRO="TRUE"
+      shift;;
+    "--skip-morpho")
+      SKIP_MORPHO="TRUE"
+      shift;;
+    "--skip-wst")
+      SKIP_WST="TRUE"
+      shift;;
+    "--skip-geo")
+      SKIP_GEO="TRUE"
+      shift;;
+    "--postgres")
+      POSTGRES="TRUE"
+      shift;;
+    *)
+      echo "Unknown Option $1"
+      usage;;
+  esac
+done
+
+if [ -z $USER ]; then
+  USER=$DEFAULT_USER
+fi
+if [ -z $PASS ]; then
+  PASS=$DEFAULT_PASS
+fi
+if [ -z $PORT ]; then
+  PORT=$DEFAULT_PORT
+fi
+if [ -z $HOST ]; then
+  HOST=$DEFAULT_HOST
+fi
+if [ -z $BACKEND_NAME ]; then
+  BACKEND_NAME=$DEFAULT_BACKEND_NAME
+fi
+if [ -z $LOGDIR ]; then
+  LOG=$DEFAULT_LOG
+fi
+
+if [ $# != 1 ]; then
+    usage
+fi
+
+if [ ! -r $1 ]; then
+    echo "Could not open $1 please ensure it exists and is readable"
+fi
+
+GEW_FILE="$1"
+RIVER_NAME=$(grep "Gew.sser" "$1" | awk '{print $2}')
+DATE=$(date +%Y.%m.%d_%H%M)
+LOG_DIR=${LOG}/${RIVER_NAME}-$DATE
+mkdir -p ${LOG_DIR}
+
+if [ "POSTGRES" = "TRUE" ]; then
+    JAR=$(echo "$JAR" | sed 's/importer/importer_psql/')
+    if [ ! -r "$JAR" ]; then
+      echo "Could not find Postgres importer $JAR"
+      exit 1
+    fi
+    OGR_CONNECTION="PG:dbname=$BACKEND_NAME host=$HOST port=$PORT \
+      user=$USER password=$PASS"
+    BACKEND_DB_PREFIX="jdbc:postgresql:"
+    BACKEND_DB_DRIVER="org.postgresql.Driver"
+    BACKEND_DB_DIALECT="org.hibernate.dialect.PostgreSQLDialect"
+else
+    BACKEND_DB_PREFIX="jdbc:oracle:thin:@"
+    BACKEND_DB_DRIVER="oracle.jdbc.OracleDriver"
+    BACKEND_DB_DIALECT="org.hibernate.dialect.OracleDialect"
+fi
+
+BACKEND_URL=$BACKEND_DB_PREFIX//$HOST:$PORT/$BACKEND_NAME
+
+echo "Importing $RIVER_NAME into $BACKEND_URL."
+
+import_hydro(){
+    LOG_FILE=${LOG_DIR}/hydro.log
+    echo Importing Hydrological data.
+    echo Logging into: $LOG_FILE
+    sed 's!./import.log!'"$LOG_FILE"'!' conf/log4j.properties > $LOG_DIR/log4j.properties
+    java -jar \
+    -Xmx$MIN_MEMORY \
+    -server \
+    -Dlog4j.configuration=file://$LOG_DIR/log4j.properties \
+    -Dflys.backend.user=$USER \
+    -Dflys.backend.password=$PASS \
+    -Dflys.backend.url=$BACKEND_URL \
+    -Dflys.backend.driver=$BACKEND_DB_DRIVER \
+    -Dflys.backend.dialect=$BACKEND_DB_DIALECT \
+    -Dflys.backend.importer.infogew.file="$GEW_FILE" \
+    -Dflys.backend.main.value.types=$IMPORTER_MAINVALUE_TYPES \
+    -Dflys.backend.importer.annotation.types=$IMPORTER_ANNOTATION_TYPES \
+    -Dflys.backend.importer.dry.run=$IMPORTER_DRY_RUN \
+    -Dflys.backend.importer.skip.annotations=false \
+    -Dflys.backend.importer.skip.bwastr=false \
+    -Dflys.backend.importer.skip.da50s=false \
+    -Dflys.backend.importer.skip.da66s=false \
+    -Dflys.backend.importer.skip.extra.wsts=false \
+    -Dflys.backend.importer.skip.fixations=false \
+    -Dflys.backend.importer.skip.flood.water=false \
+    -Dflys.backend.importer.skip.flood.protection=false \
+    -Dflys.backend.importer.skip.gauges=false \
+    -Dflys.backend.importer.skip.historical.discharge.tables=false \
+    -Dflys.backend.importer.skip.hyks=false \
+    -Dflys.backend.importer.skip.official.lines=false \
+    -Dflys.backend.importer.skip.prfs=false \
+    -Dflys.backend.importer.skip.w80s=false \
+    -Dflys.backend.importer.skip.wst=true \
+    -Dflys.backend.importer.skip.waterlevel.differences=true \
+    -Dflys.backend.importer.skip.waterlevels=true \
+    -Dflys.backend.importer.skip.sq.relation=true \
+    -Dflys.backend.importer.skip.sediment.density=true \
+    -Dflys.backend.importer.skip.sediment.yield=true \
+    -Dflys.backend.importer.skip.morphological.width=true \
+    -Dflys.backend.importer.skip.flow.velocity=true \
+    -Dflys.backend.importer.skip.bed.height.single=true \
+    -Dflys.backend.importer.skip.bed.height.epoch=true \
+    $JAR
+}
+
+import_morpho(){
+    LOG_FILE=${LOG_DIR}/morpho.log
+    echo Importing Morphological data.
+    echo Logging into: $LOG_FILE
+    sed 's!./import.log!'"$LOG_FILE"'!' conf/log4j.properties > $LOG_DIR/log4j.properties
+    java -jar \
+    -Xmx$MIN_MEMORY \
+    -server \
+    -Dlog4j.configuration=file://$LOG_DIR/log4j.properties \
+    -Dflys.backend.user=$USER \
+    -Dflys.backend.password=$PASS \
+    -Dflys.backend.url=$BACKEND_URL \
+    -Dflys.backend.driver=$BACKEND_DB_DRIVER \
+    -Dflys.backend.dialect=$BACKEND_DB_DIALECT \
+    -Dflys.backend.importer.infogew.file="$GEW_FILE" \
+    -Dflys.backend.main.value.types=$IMPORTER_MAINVALUE_TYPES \
+    -Dflys.backend.importer.annotation.types=$IMPORTER_ANNOTATION_TYPES \
+    -Dflys.backend.importer.dry.run=$IMPORTER_DRY_RUN \
+    -Dflys.backend.importer.skip.annotations=true \
+    -Dflys.backend.importer.skip.bwastr=true \
+    -Dflys.backend.importer.skip.da50s=true \
+    -Dflys.backend.importer.skip.da66s=true \
+    -Dflys.backend.importer.skip.extra.wsts=true \
+    -Dflys.backend.importer.skip.fixations=true \
+    -Dflys.backend.importer.skip.flood.water=true \
+    -Dflys.backend.importer.skip.flood.protection=true \
+    -Dflys.backend.importer.skip.gauges=true \
+    -Dflys.backend.importer.skip.historical.discharge.tables=true \
+    -Dflys.backend.importer.skip.hyks=true \
+    -Dflys.backend.importer.skip.official.lines=true \
+    -Dflys.backend.importer.skip.prfs=true \
+    -Dflys.backend.importer.skip.w80s=true \
+    -Dflys.backend.importer.skip.wst=true \
+    -Dflys.backend.importer.skip.waterlevel.differences=false \
+    -Dflys.backend.importer.skip.waterlevels=false \
+    -Dflys.backend.importer.skip.sq.relation=false \
+    -Dflys.backend.importer.skip.sediment.density=false \
+    -Dflys.backend.importer.skip.sediment.yield=false \
+    -Dflys.backend.importer.skip.morphological.width=false \
+    -Dflys.backend.importer.skip.flow.velocity=false \
+    -Dflys.backend.importer.skip.bed.height.single=false \
+    -Dflys.backend.importer.skip.bed.height.epoch=false \
+    $JAR
+}
+
+import_wst(){
+    LOG_FILE=${LOG_DIR}/wst.log
+    echo Importing WST data.
+    echo Logging into: $LOG_FILE
+    sed 's!./import.log!'"$LOG_FILE"'!' conf/log4j.properties > $LOG_DIR/log4j.properties
+    java -jar \
+    -Xmx$MIN_MEMORY \
+    -server \
+    -Dlog4j.configuration=file://$LOG_DIR/log4j.properties \
+    -Dflys.backend.user=$USER \
+    -Dflys.backend.password=$PASS \
+    -Dflys.backend.url=$BACKEND_URL \
+    -Dflys.backend.driver=$BACKEND_DB_DRIVER \
+    -Dflys.backend.dialect=$BACKEND_DB_DIALECT \
+    -Dflys.backend.importer.infogew.file="$GEW_FILE" \
+    -Dflys.backend.main.value.types=$IMPORTER_MAINVALUE_TYPES \
+    -Dflys.backend.importer.annotation.types=$IMPORTER_ANNOTATION_TYPES \
+    -Dflys.backend.importer.dry.run=$IMPORTER_DRY_RUN \
+    -Dflys.backend.importer.skip.annotations=true \
+    -Dflys.backend.importer.skip.bwastr=true \
+    -Dflys.backend.importer.skip.da50s=true \
+    -Dflys.backend.importer.skip.da66s=true \
+    -Dflys.backend.importer.skip.extra.wsts=true \
+    -Dflys.backend.importer.skip.fixations=true \
+    -Dflys.backend.importer.skip.flood.water=true \
+    -Dflys.backend.importer.skip.flood.protection=true \
+    -Dflys.backend.importer.skip.gauges=true \
+    -Dflys.backend.importer.skip.historical.discharge.tables=true \
+    -Dflys.backend.importer.skip.hyks=true \
+    -Dflys.backend.importer.skip.official.lines=true \
+    -Dflys.backend.importer.skip.prfs=true \
+    -Dflys.backend.importer.skip.w80s=true \
+    -Dflys.backend.importer.skip.wst=false \
+    -Dflys.backend.importer.skip.waterlevel.differences=true \
+    -Dflys.backend.importer.skip.waterlevels=true \
+    -Dflys.backend.importer.skip.sq.relation=true \
+    -Dflys.backend.importer.skip.sediment.density=true \
+    -Dflys.backend.importer.skip.sediment.yield=true \
+    -Dflys.backend.importer.skip.morphological.width=true \
+    -Dflys.backend.importer.skip.flow.velocity=true \
+    -Dflys.backend.importer.skip.bed.height.single=true \
+    -Dflys.backend.importer.skip.bed.height.epoch=true \
+    $JAR
+}
+
+import_geo(){
+    LOG_FILE=${LOG_DIR}/geo.log
+    echo Importing Geographic data.
+    echo Logging into: $LOG_FILE
+
+    python $DIR/geodaesie/shpimporter.py \
+    --directory $RIVER_PATH \
+    --river_name $RIVER_NAME \
+    --ogr_connection "$OGR_CONNECTION" \
+    --host $HOST \
+    --user $USER \
+    --password $PASS \
+    --verbose 2 2>&1 > "$LOG_FILE"
+}
+
+
+if [ "$SKIP_HYDRO" != "TRUE" ]; then
+import_hydro
+fi
+if [ "$SKIP_WST" != "TRUE" ]; then
+import_wst
+fi
+if [ "$SKIP_MORPHO" != "TRUE" ]; then
+import_morpho
+fi
+if [ "$SKIP_GEO" != "TRUE" ]; then
+import_geo
+fi
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