Mercurial > dive4elements > river

annotate backend/contrib/import_river.sh @ 8349:7341bebc79d0

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Let injectors be strictly distinct from each other and give more meaningful names (they know what they do, not where they will be used. The latter is configuration).
author Tom Gottfried <tom@intevation.de>
date Wed, 01 Oct 2014 12:23:39 +0200
parents d86cc6a17b7a
children 44ba71b0b75a
rev   line source
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1 #!/bin/bash
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2 # Import script for rivers
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3 #
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4 # Authors:
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5 # Andre Heinecke <aheinecke@intevation.de>
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6 #
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7 # Copyright:
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8 # Copyright (C) 2013 Intevation GmbH
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9 #
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10 # This program is free software; you can redistribute it and/or
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11 # modify it under the terms of the GNU General Public License
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12 # as published by the Free Software Foundation; either version 2
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13 # of the License, or (at your option) any later version.
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14 #
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15 # This program is distributed in the hope that it will be useful,
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16 # but WITHOUT ANY WARRANTY; without even the implied warranty of
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17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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18 # GNU General Public License for more details.
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19 #
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20 # You should have received a copy of the GNU General Public License
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21 # along with this program; if not, write to the Free Software
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22 # Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
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23
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24 set -e
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25
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26 # Default settings
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27 DEFAULT_HOST=localhost
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28 DEFAULT_PORT=1521
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29 DEFAULT_USER=flys_dami
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30 DEFAULT_PASS=flys_dami
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31 DEFAULT_LOG=$PWD/logs
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32 DEFAULT_BACKEND_NAME="XE"
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33 JAR="hydr_morph/importer.jar"
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34 IMPORTER_DRY_RUN=false
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35 IMPORTER_MAINVALUE_TYPES=QWTD-
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36 IMPORTER_ANNOTATION_TYPES="conf/annotation-types.xml"
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37
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38
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39 MIN_MEMORY="8024m"
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40
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41 # Default encoding. Change here if necessary
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42 export LC_ALL=de_DE@euro
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43
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44 if [ -z "$OPTIONAL_LIBS" ]; then
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45 OPTIONAL_LIBS="$(dirname $0)/opt"
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46 fi
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47
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48 if [ -d "$OPTIONAL_LIBS" ]; then
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49 export PATH="$OPTIONAL_LIBS/bin:$PATH"
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50 export LD_LIBRARY_PATH="$OPTIONAL_LIBS/lib:$LD_LIBRARY_PATH"
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51 export LD_LIBRARY_PATH="$OPTIONAL_LIBS/lib64:$LD_LIBRARY_PATH"
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52 export PYTHONPATH="$OPTIONAL_LIBS/lib/python2.6/site-packages:$PYTHONPATH"
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53 export PYTHONPATH="$OPTIONAL_LIBS/lib64/python2.6/site-packages:$PYTHONPATH"
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54 export GDAL_DATA="$OPTIONAL_LIBS/share/gdal"
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55 fi
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56
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57 usage(){
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58 cat << EOF
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59
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60 usage: $0 [options] gew_file
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61
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62 Import a river described by the gew_file
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63
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64 OPTIONS:
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65 -?, --help Show this message
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66 -u, --username=<username> Database username. Default: $DEFAULT_USER
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67 -w, --password=<password> Database password. Default: $DEFAULT_PASS
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68 -h, --host=<host> Connect to database on host <host>.
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69 Default: $DEFAULT_HOST
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70 -p, --port=<number> Use port number <number>. Default: $DEFAULT_PORT
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71 -d, --db-name=<database_name> Name of the database / backend. Default: $DEFAULT_BACKEND_NAME
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72 -l, --log-dir=<directory> Directory in which to create the log files.
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73 Default: $PWD/logs
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74 --postgres Database is PostgreSQL
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75 --skip-hydro Skip import of hydrological data
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76 --skip-morpho Skip import of morphological data
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77 --skip-geo Skip import of geographic data
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78 --skip-prf Skip import of cross section data
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79 EOF
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80 exit 0
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81 }
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82
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83 OPTS=`getopt -o ?u:w:h:p:d:l: \
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84 -l help,username:,password:,host:,port:,db-name:,log-dir:,skip-hydro,skip-morpho,skip-geo,skip-prf,postgres \
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85 -n $0 -- "$@"`
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86 if [ $? != 0 ] ; then usage; fi
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87 eval set -- "$OPTS"
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88 while true ; do
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89 case "$1" in
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90 "-?"|"--help")
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91 usage;;
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92 "--")
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93 shift
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94 break;;
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95 "-u"|"--username")
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96 DBUSER=$2
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97 shift 2;;
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98 "-w"|"--password")
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99 DBPASS=$2
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100 shift 2;;
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101 "-h"|"--host")
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102 DBHOST=$2
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103 shift 2;;
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104 "-p"|"--port")
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105 DBPORT=$2
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106 shift 2;;
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107 "-l"|"--log-dir")
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108 LOG=$2
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109 shift 2;;
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110 "-d"|"--db-name")
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111 BACKEND_NAME=$2
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112 shift 2;;
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113 "--skip-hydro")
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114 SKIP_HYDRO="TRUE"
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115 shift;;
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116 "--skip-morpho")
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117 SKIP_MORPHO="TRUE"
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118 shift;;
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119 "--skip-prf")
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120 SKIP_PRF="TRUE"
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121 shift;;
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122 "--skip-geo")
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123 SKIP_GEO="TRUE"
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124 shift;;
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125 "--postgres")
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126 POSTGRES="TRUE"
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127 shift;;
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128 *)
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129 echo "Unknown Option $1"
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130 usage;;
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131 esac
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132 done
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133
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134 if [ -z $DBUSER ]; then
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135 DBUSER=$DEFAULT_USER
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136 fi
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137 if [ -z $DBPASS ]; then
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138 DBPASS=$DEFAULT_PASS
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139 fi
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140 if [ -z $DBPORT ]; then
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141 DBPORT=$DEFAULT_PORT
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142 fi
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143 if [ -z $DBHOST ]; then
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144 DBHOST=$DEFAULT_HOST
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145 fi
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146 if [ -z $BACKEND_NAME ]; then
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147 BACKEND_NAME=$DEFAULT_BACKEND_NAME
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148 fi
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149 if [ -z $LOG ]; then
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150 LOG=$DEFAULT_LOG
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151 fi
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152
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153 if [ $# != 1 ]; then
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154 usage
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155 fi
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156
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157 if [ ! -r $1 ]; then
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158 echo "Could not open $1 please ensure it exists and is readable"
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159 fi
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160
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161 GEW_FILE="$1"
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162 RIVER_NAME=$(grep "Gew.sser" "$1" | sed 's/Gew.sser: //')
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163 DATE=$(date +%Y.%m.%d_%H%M)
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164 LOG_DIR=${LOG}/`basename $GEW_FILE .gew`-$DATE
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165 mkdir -p ${LOG_DIR}
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166
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diff changeset
167 cat > "$LOG_DIR/log4j.properties" << "EOF"
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168 log4j.rootLogger=DEBUG, IMPORTER
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diff changeset
169 log4j.appender.IMPORTER.layout=org.apache.log4j.PatternLayout
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170 log4j.appender.IMPORTER.layout.ConversionPattern=%d [%t] %-5p %c - %m%n
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171 log4j.appender.IMPORTER=org.apache.log4j.RollingFileAppender
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172 log4j.appender.IMPORTER.File=./import.log
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173 log4j.appender.IMPORTER.MaxFileSize=100000KB
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174 log4j.appender.IMPORTER.MaxBackupIndex=10
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175 EOF
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176
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480d2f1f61cc Fix import_rivers script for postgres
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177 if [ "$POSTGRES" = "TRUE" ]; then
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178 JAR=$(echo "$JAR" | sed 's/importer/importer_psql/')
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179 if [ ! -r "$JAR" ]; then
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180 echo "Could not find Postgres importer $JAR"
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181 exit 1
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182 fi
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183 OGR_CONNECTION="PG:dbname=$BACKEND_NAME host=$DBHOST port=$DBPORT \
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184 user=$DBUSER password=$DBPASS"
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185 BACKEND_DB_PREFIX="jdbc:postgresql:"
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186 BACKEND_DB_DRIVER="org.postgresql.Driver"
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187 BACKEND_DB_DIALECT="org.hibernate.dialect.PostgreSQLDialect"
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188 else
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189 BACKEND_DB_PREFIX="jdbc:oracle:thin:@"
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190 BACKEND_DB_DRIVER="oracle.jdbc.OracleDriver"
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191 BACKEND_DB_DIALECT="org.hibernate.dialect.OracleDialect"
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192 fi
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193
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194 BACKEND_URL=$BACKEND_DB_PREFIX//$DBHOST:$DBPORT/$BACKEND_NAME
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195
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196 echo "Importing $RIVER_NAME into $BACKEND_URL."
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197
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198 import_hydro(){
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199 LOG_FILE=${LOG_DIR}/hydro.log
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200 echo Importing Hydrological data.
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201 echo Logging into: $LOG_FILE
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202 sed -i 's!\(log4j.appender.IMPORTER.File=\).*!\1'"$LOG_FILE"'!' \
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203 $LOG_DIR/log4j.properties
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204 java -jar \
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205 -Xmx$MIN_MEMORY \
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206 -server \
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207 -Dlog4j.configuration=file://$LOG_DIR/log4j.properties \
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208 -Dflys.backend.user=$DBUSER \
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209 -Dflys.backend.password=$DBPASS \
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210 -Dflys.backend.url=$BACKEND_URL \
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211 -Dflys.backend.driver=$BACKEND_DB_DRIVER \
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diff changeset
212 -Dflys.backend.dialect=$BACKEND_DB_DIALECT \
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213 -Dflys.backend.importer.infogew.file="$GEW_FILE" \
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214 -Dflys.backend.main.value.types=$IMPORTER_MAINVALUE_TYPES \
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215 -Dflys.backend.importer.annotation.types=$IMPORTER_ANNOTATION_TYPES \
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216 -Dflys.backend.importer.dry.run=$IMPORTER_DRY_RUN \
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217 -Dflys.backend.importer.skip.annotations=false \
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218 -Dflys.backend.importer.skip.bwastr=false \
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219 -Dflys.backend.importer.skip.extra.wsts=false \
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220 -Dflys.backend.importer.skip.fixations=false \
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diff changeset
221 -Dflys.backend.importer.skip.flood.water=false \
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222 -Dflys.backend.importer.skip.flood.protection=false \
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diff changeset
223 -Dflys.backend.importer.skip.gauges=false \
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5e621410db05 Importer: skip historical discharge tables per default as they come via ETL.
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diff changeset
224 -Dflys.backend.importer.skip.historical.discharge.tables=true \
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225 -Dflys.backend.importer.skip.hyks=false \
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diff changeset
226 -Dflys.backend.importer.skip.official.lines=false \
6825
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parents: 6706
diff changeset
227 -Dflys.backend.importer.skip.prfs=true \
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parents: 6706
diff changeset
228 -Dflys.backend.importer.skip.w80s=true \
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diff changeset
229 -Dflys.backend.importer.skip.w80.csvs=true \
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diff changeset
230 -Dflys.backend.importer.skip.da50s=true \
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parents: 6706
diff changeset
231 -Dflys.backend.importer.skip.da66s=true \
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parents: 6706
diff changeset
232 -Dflys.backend.importer.skip.wst=false \
6417
14b5674e57a4 Importer: add skip flag for measurement stations to scripts
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parents: 5838
diff changeset
233 -Dflys.backend.importer.skip.measurement.stations=true \
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234 -Dflys.backend.importer.skip.waterlevel.differences=true \
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diff changeset
235 -Dflys.backend.importer.skip.waterlevels=true \
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diff changeset
236 -Dflys.backend.importer.skip.sq.relation=true \
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diff changeset
237 -Dflys.backend.importer.skip.sediment.density=true \
8056
d86cc6a17b7a Importer: Import sediment load at measurement stations.
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parents: 8032
diff changeset
238 -Dflys.backend.importer.skip.sediment.load=true \
8032
fd3a24336e6a SCHEMA CHANGE and Importer (only longitudinal section data so far): only grain fractions given now in schema are valid. We are handling sediment loads, not yields.
"Tom Gottfried <tom@intevation.de>"
parents: 7925
diff changeset
239 -Dflys.backend.importer.skip.sediment.load.ls=true \
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240 -Dflys.backend.importer.skip.morphological.width=true \
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parents:
diff changeset
241 -Dflys.backend.importer.skip.flow.velocity=true \
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parents:
diff changeset
242 -Dflys.backend.importer.skip.bed.height.single=true \
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diff changeset
243 $JAR
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244 }
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245
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diff changeset
246 import_morpho(){
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247 LOG_FILE=${LOG_DIR}/morpho.log
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248 echo Importing Morphological data.
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diff changeset
249 echo Logging into: $LOG_FILE
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250 sed -i 's!\(log4j.appender.IMPORTER.File=\).*!\1'"$LOG_FILE"'!' \
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diff changeset
251 $LOG_DIR/log4j.properties
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diff changeset
252 java -jar \
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diff changeset
253 -Xmx$MIN_MEMORY \
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diff changeset
254 -server \
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diff changeset
255 -Dlog4j.configuration=file://$LOG_DIR/log4j.properties \
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diff changeset
256 -Dflys.backend.user=$DBUSER \
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257 -Dflys.backend.password=$DBPASS \
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258 -Dflys.backend.url=$BACKEND_URL \
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parents:
diff changeset
259 -Dflys.backend.driver=$BACKEND_DB_DRIVER \
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parents:
diff changeset
260 -Dflys.backend.dialect=$BACKEND_DB_DIALECT \
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261 -Dflys.backend.importer.infogew.file="$GEW_FILE" \
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parents:
diff changeset
262 -Dflys.backend.main.value.types=$IMPORTER_MAINVALUE_TYPES \
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parents:
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263 -Dflys.backend.importer.annotation.types=$IMPORTER_ANNOTATION_TYPES \
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parents:
diff changeset
264 -Dflys.backend.importer.dry.run=$IMPORTER_DRY_RUN \
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parents:
diff changeset
265 -Dflys.backend.importer.skip.annotations=true \
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parents:
diff changeset
266 -Dflys.backend.importer.skip.bwastr=true \
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parents:
diff changeset
267 -Dflys.backend.importer.skip.extra.wsts=true \
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parents:
diff changeset
268 -Dflys.backend.importer.skip.fixations=true \
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parents:
diff changeset
269 -Dflys.backend.importer.skip.flood.water=true \
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parents:
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270 -Dflys.backend.importer.skip.flood.protection=true \
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diff changeset
271 -Dflys.backend.importer.skip.gauges=true \
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parents:
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272 -Dflys.backend.importer.skip.historical.discharge.tables=true \
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273 -Dflys.backend.importer.skip.hyks=true \
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274 -Dflys.backend.importer.skip.official.lines=true \
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275 -Dflys.backend.importer.skip.prfs=true \
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276 -Dflys.backend.importer.skip.w80s=true \
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277 -Dflys.backend.importer.skip.w80.csvs=true \
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278 -Dflys.backend.importer.skip.da50s=true \
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279 -Dflys.backend.importer.skip.da66s=true \
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280 -Dflys.backend.importer.skip.wst=true \
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281 -Dflys.backend.importer.skip.measurement.stations=false \
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282 -Dflys.backend.importer.skip.waterlevel.differences=false \
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283 -Dflys.backend.importer.skip.waterlevels=false \
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284 -Dflys.backend.importer.skip.sq.relation=false \
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285 -Dflys.backend.importer.skip.sediment.density=false \
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d86cc6a17b7a Importer: Import sediment load at measurement stations.
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286 -Dflys.backend.importer.skip.sediment.load=false \
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fd3a24336e6a SCHEMA CHANGE and Importer (only longitudinal section data so far): only grain fractions given now in schema are valid. We are handling sediment loads, not yields.
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287 -Dflys.backend.importer.skip.sediment.load.ls=false \
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288 -Dflys.backend.importer.skip.morphological.width=false \
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289 -Dflys.backend.importer.skip.flow.velocity=false \
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290 -Dflys.backend.importer.skip.bed.height.single=false \
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291 $JAR
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292 }
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293
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294 import_prf(){
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295 LOG_FILE=${LOG_DIR}/prf.log
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296 echo Importing cross section data.
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297 echo Logging into: $LOG_FILE
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298 sed -i 's!\(log4j.appender.IMPORTER.File=\).*!\1'"$LOG_FILE"'!' \
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299 $LOG_DIR/log4j.properties
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300 java -jar \
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301 -Xmx$MIN_MEMORY \
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302 -server \
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303 -Dlog4j.configuration=file://$LOG_DIR/log4j.properties \
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304 -Dflys.backend.user=$DBUSER \
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305 -Dflys.backend.password=$DBPASS \
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306 -Dflys.backend.url=$BACKEND_URL \
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307 -Dflys.backend.driver=$BACKEND_DB_DRIVER \
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308 -Dflys.backend.dialect=$BACKEND_DB_DIALECT \
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309 -Dflys.backend.importer.infogew.file="$GEW_FILE" \
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310 -Dflys.backend.main.value.types=$IMPORTER_MAINVALUE_TYPES \
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311 -Dflys.backend.importer.annotation.types=$IMPORTER_ANNOTATION_TYPES \
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312 -Dflys.backend.importer.dry.run=$IMPORTER_DRY_RUN \
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313 -Dflys.backend.importer.skip.annotations=true \
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314 -Dflys.backend.importer.skip.bwastr=true \
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315 -Dflys.backend.importer.skip.extra.wsts=true \
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316 -Dflys.backend.importer.skip.fixations=true \
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317 -Dflys.backend.importer.skip.flood.water=true \
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318 -Dflys.backend.importer.skip.flood.protection=true \
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319 -Dflys.backend.importer.skip.gauges=true \
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320 -Dflys.backend.importer.skip.historical.discharge.tables=true \
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parents:
diff changeset
321 -Dflys.backend.importer.skip.hyks=true \
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diff changeset
322 -Dflys.backend.importer.skip.official.lines=true \
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323 -Dflys.backend.importer.skip.prfs=false \
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diff changeset
324 -Dflys.backend.importer.skip.w80s=false \
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diff changeset
325 -Dflys.backend.importer.skip.w80.csvs=false \
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diff changeset
326 -Dflys.backend.importer.skip.da50s=false \
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parents: 6706
diff changeset
327 -Dflys.backend.importer.skip.da66s=false \
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parents: 6706
diff changeset
328 -Dflys.backend.importer.skip.wst=true \
6417
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diff changeset
329 -Dflys.backend.importer.skip.measurement.stations=true \
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330 -Dflys.backend.importer.skip.waterlevel.differences=true \
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parents:
diff changeset
331 -Dflys.backend.importer.skip.waterlevels=true \
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parents:
diff changeset
332 -Dflys.backend.importer.skip.sq.relation=true \
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parents:
diff changeset
333 -Dflys.backend.importer.skip.sediment.density=true \
8056
d86cc6a17b7a Importer: Import sediment load at measurement stations.
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parents: 8032
diff changeset
334 -Dflys.backend.importer.skip.sediment.load=true \
8032
fd3a24336e6a SCHEMA CHANGE and Importer (only longitudinal section data so far): only grain fractions given now in schema are valid. We are handling sediment loads, not yields.
"Tom Gottfried <tom@intevation.de>"
parents: 7925
diff changeset
335 -Dflys.backend.importer.skip.sediment.load.ls=true \
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parents:
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336 -Dflys.backend.importer.skip.morphological.width=true \
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parents:
diff changeset
337 -Dflys.backend.importer.skip.flow.velocity=true \
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diff changeset
338 -Dflys.backend.importer.skip.bed.height.single=true \
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diff changeset
339 $JAR
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340 }
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341
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342 import_geo(){
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343 LOG_FILE=${LOG_DIR}/geo.log
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diff changeset
344 echo Importing Geographic data.
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345 echo Logging into: $LOG_FILE
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346
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diff changeset
347 RIVER_PATH=$(grep "WSTDatei:" "$GEW_FILE" | awk '{print $2}')
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diff changeset
348 RIVER_PATH=$(dirname "$RIVER_PATH")/../..
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diff changeset
349 RIVER_PATH=$(readlink -f "$RIVER_PATH")
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diff changeset
350
db1a000a21a9 Make OPTIONAL_LIBS overwritable and fix geo importer call
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diff changeset
351 exec python $(dirname $0)/geodaesie/shpimporter.py \
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parents:
diff changeset
352 --directory $RIVER_PATH \
5563
673f68bb19a4 Geo-importer: accept river names with white space
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diff changeset
353 --river_name "$RIVER_NAME" \
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diff changeset
354 --ogr_connection "$OGR_CONNECTION" \
6658
89f856e24d27 Importer scripts: shpimporter needs backend name to play with Oracle.
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parents: 6651
diff changeset
355 --host $DBHOST/$BACKEND_NAME \
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diff changeset
356 --user $DBUSER \
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diff changeset
357 --password $DBPASS \
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diff changeset
358 --verbose 1 \
db1a000a21a9 Make OPTIONAL_LIBS overwritable and fix geo importer call
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parents: 5168
diff changeset
359 > "$LOG_FILE" 2>&1
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diff changeset
360 }
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parents:
diff changeset
361
a0abb6787ab1 Add first version of import_river script
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parents:
diff changeset
362
a0abb6787ab1 Add first version of import_river script
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parents:
diff changeset
363 if [ "$SKIP_HYDRO" != "TRUE" ]; then
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parents:
diff changeset
364 import_hydro
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parents:
diff changeset
365 fi
6825
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parents: 6706
diff changeset
366 if [ "$SKIP_PRF" != "TRUE" ]; then
3aff1b00618a import_rivers.sh: skip cross sections instead of WST-file in first run.
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parents: 6706
diff changeset
367 import_prf
5167
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Andre Heinecke <aheinecke@intevation.de>
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diff changeset
368 fi
a0abb6787ab1 Add first version of import_river script
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parents:
diff changeset
369 if [ "$SKIP_MORPHO" != "TRUE" ]; then
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parents:
diff changeset
370 import_morpho
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parents:
diff changeset
371 fi
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parents:
diff changeset
372 if [ "$SKIP_GEO" != "TRUE" ]; then
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parents:
diff changeset
373 import_geo
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parents:
diff changeset
374 fi
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