Mercurial > dive4elements > river

annotate backend/src/main/java/org/dive4elements/river/importer/parsers/BedHeightSingleParser.java @ 7354:809e76b7fe38

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BedHeightSingleParser: do not omit lines if last column is empty.
author Tom Gottfried <tom@intevation.de>
date Wed, 16 Oct 2013 14:40:19 +0200
parents 6c003cbb27f1
children d12478cc5bb0
rev   line source
5844
4dd33b86dc61 Added header to river backend.
Sascha L. Teichmann <teichmann@intevation.de>
parents: 5838
diff changeset
1 /* Copyright (C) 2011, 2012, 2013 by Bundesanstalt für Gewässerkunde
4dd33b86dc61 Added header to river backend.
Sascha L. Teichmann <teichmann@intevation.de>
parents: 5838
diff changeset
2 * Software engineering by Intevation GmbH
4dd33b86dc61 Added header to river backend.
Sascha L. Teichmann <teichmann@intevation.de>
parents: 5838
diff changeset
3 *
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4c3ccf2b0304 Removed trailing whitespace.
Sascha L. Teichmann <teichmann@intevation.de>
parents: 5844
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4 * This file is Free Software under the GNU AGPL (>=v3)
5844
4dd33b86dc61 Added header to river backend.
Sascha L. Teichmann <teichmann@intevation.de>
parents: 5838
diff changeset
5 * and comes with ABSOLUTELY NO WARRANTY! Check out the
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Sascha L. Teichmann <teichmann@intevation.de>
parents: 5844
diff changeset
6 * documentation coming with Dive4Elements River for details.
5844
4dd33b86dc61 Added header to river backend.
Sascha L. Teichmann <teichmann@intevation.de>
parents: 5838
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7 */
4dd33b86dc61 Added header to river backend.
Sascha L. Teichmann <teichmann@intevation.de>
parents: 5838
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8
5829
18619c1e7c2a Repaired internal references.
Sascha L. Teichmann <teichmann@intevation.de>
parents: 5828
diff changeset
9 package org.dive4elements.river.importer.parsers;
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33f40b23edd8 Initial checkin for parsing MINFO bed heights.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
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10
2808
b57c95094b68 Finished work on parsing meta information and data specific to single bed heights files in MINFO.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents: 2806
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11 import java.math.BigDecimal;
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Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents: 2806
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12
b57c95094b68 Finished work on parsing meta information and data specific to single bed heights files in MINFO.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents: 2806
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13 import java.text.ParseException;
b57c95094b68 Finished work on parsing meta information and data specific to single bed heights files in MINFO.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents: 2806
diff changeset
14
2806
33f40b23edd8 Initial checkin for parsing MINFO bed heights.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
15 import org.apache.log4j.Logger;
33f40b23edd8 Initial checkin for parsing MINFO bed heights.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
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16
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18619c1e7c2a Repaired internal references.
Sascha L. Teichmann <teichmann@intevation.de>
parents: 5828
diff changeset
17 import org.dive4elements.river.importer.ImportBedHeight;
18619c1e7c2a Repaired internal references.
Sascha L. Teichmann <teichmann@intevation.de>
parents: 5828
diff changeset
18 import org.dive4elements.river.importer.ImportBedHeightSingle;
18619c1e7c2a Repaired internal references.
Sascha L. Teichmann <teichmann@intevation.de>
parents: 5828
diff changeset
19 import org.dive4elements.river.importer.ImportBedHeightSingleValue;
2806
33f40b23edd8 Initial checkin for parsing MINFO bed heights.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
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20
33f40b23edd8 Initial checkin for parsing MINFO bed heights.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
diff changeset
21
2811
8926571e47fb Finished importing MINFO bed heights (single and epoch).
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents: 2809
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22 public class BedHeightSingleParser extends BedHeightParser {
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Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
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23
33f40b23edd8 Initial checkin for parsing MINFO bed heights.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
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24 private static final Logger log =
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25 Logger.getLogger(BedHeightSingleParser.class);
33f40b23edd8 Initial checkin for parsing MINFO bed heights.
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parents:
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26
33f40b23edd8 Initial checkin for parsing MINFO bed heights.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents:
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27
2808
b57c95094b68 Finished work on parsing meta information and data specific to single bed heights files in MINFO.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents: 2806
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28
2811
8926571e47fb Finished importing MINFO bed heights (single and epoch).
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents: 2809
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29 @Override
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30 protected ImportBedHeight newImportBedHeight(String description) {
8926571e47fb Finished importing MINFO bed heights (single and epoch).
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parents: 2809
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31 return new ImportBedHeightSingle(description);
2808
b57c95094b68 Finished work on parsing meta information and data specific to single bed heights files in MINFO.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents: 2806
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32 }
b57c95094b68 Finished work on parsing meta information and data specific to single bed heights files in MINFO.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents: 2806
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33
b57c95094b68 Finished work on parsing meta information and data specific to single bed heights files in MINFO.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents: 2806
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34
b57c95094b68 Finished work on parsing meta information and data specific to single bed heights files in MINFO.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents: 2806
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35
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26685b846a29 Let importer handle gappy single bed height values.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 3662
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36 /**
26685b846a29 Let importer handle gappy single bed height values.
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37 * Create ImportBedHeightSingleValue from a line of csv file, add
26685b846a29 Let importer handle gappy single bed height values.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 3662
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38 * it to the ImportBedHeight.
26685b846a29 Let importer handle gappy single bed height values.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 3662
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39 */
2811
8926571e47fb Finished importing MINFO bed heights (single and epoch).
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents: 2809
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40 @Override
8926571e47fb Finished importing MINFO bed heights (single and epoch).
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents: 2809
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41 protected void handleDataLine(ImportBedHeight obj, String line) {
7354
809e76b7fe38 BedHeightSingleParser: do not omit lines if last column is empty.
Tom Gottfried <tom@intevation.de>
parents: 7344
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42 String[] values = line.split(SEPERATOR_CHAR, -1);
2808
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Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents: 2806
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43
7354
809e76b7fe38 BedHeightSingleParser: do not omit lines if last column is empty.
Tom Gottfried <tom@intevation.de>
parents: 7344
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44 if (values == null) {
809e76b7fe38 BedHeightSingleParser: do not omit lines if last column is empty.
Tom Gottfried <tom@intevation.de>
parents: 7344
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45 log.warn("BSP: Error while parsing data line: '" + line + "'");
2808
b57c95094b68 Finished work on parsing meta information and data specific to single bed heights files in MINFO.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents: 2806
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46 return;
b57c95094b68 Finished work on parsing meta information and data specific to single bed heights files in MINFO.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents: 2806
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47 }
b57c95094b68 Finished work on parsing meta information and data specific to single bed heights files in MINFO.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents: 2806
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48
6203
a3fb76cf79b6 backout backout as it is now safely in a branch
Tom Gottfried <tom.gottfried@intevation.de>
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49 Double km;
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50
26685b846a29 Let importer handle gappy single bed height values.
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51 try {
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a3fb76cf79b6 backout backout as it is now safely in a branch
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52 km = new Double(nf.parse(values[0]).doubleValue());
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53
e7526a074c0d Bed height parser: check for duplicate stations
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54 Double key = Double.valueOf(km);
e7526a074c0d Bed height parser: check for duplicate stations
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55
e7526a074c0d Bed height parser: check for duplicate stations
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56 if (kmExists.contains(key)) {
e7526a074c0d Bed height parser: check for duplicate stations
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57 log.warn("duplicate station '" + km + "': -> ignored");
e7526a074c0d Bed height parser: check for duplicate stations
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parents: 6203
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58 return;
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parents: 6203
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59 }
e7526a074c0d Bed height parser: check for duplicate stations
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parents: 6203
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60
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61 kmExists.add(key);
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62 }
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63
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64 catch (ParseException e) {
26685b846a29 Let importer handle gappy single bed height values.
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parents: 3662
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65 // We expect a lot of ";;;;;;" lines.
26685b846a29 Let importer handle gappy single bed height values.
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parents: 3662
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66 //log.warn("BSP: Error while parsing km of data row.", e);
26685b846a29 Let importer handle gappy single bed height values.
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parents: 3662
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67 return;
26685b846a29 Let importer handle gappy single bed height values.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 3662
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68 }
26685b846a29 Let importer handle gappy single bed height values.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 3662
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69
26685b846a29 Let importer handle gappy single bed height values.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 3662
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70 // Handle gaps like "10,0;;;;;".
26685b846a29 Let importer handle gappy single bed height values.
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parents: 3662
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71 if (values.length == 1) {
6047
1bb4b51ff1e6 BHP: do not import lines without useful data
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72 // Do not import line without useful data
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73 return;
26685b846a29 Let importer handle gappy single bed height values.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 3662
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74 }
26685b846a29 Let importer handle gappy single bed height values.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 3662
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75
26685b846a29 Let importer handle gappy single bed height values.
Felix Wolfsteller <felix.wolfsteller@intevation.de>
parents: 3662
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76 // Because we cannot enforce consistency of values with complete data
26685b846a29 Let importer handle gappy single bed height values.
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parents: 3662
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77 // via null constraints in the database (as there are "gap" values),
26685b846a29 Let importer handle gappy single bed height values.
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parents: 3662
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78 // do this checks manually.
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f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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79 // if (values[3].length() == 0 || values[4].length() == 0
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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parents: 6273
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80 // || values[5].length() == 0) {
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81 //log.warn("BSP: Error while parsing data row (manual null constraint violated).");
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f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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82 // return;
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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83 //}
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parents: 3662
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84
6298
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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85 Double height = null;
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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86 if (values[1].length() > 0) {
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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parents: 6273
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87 try {
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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parents: 6273
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88 height = new Double(nf.parse(values[1]).doubleValue());
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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parents: 6273
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89 }
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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parents: 6273
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90 catch (ParseException e) {
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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parents: 6273
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91 log.warn("BSP: unparseable height " + values[1]);
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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parents: 6273
diff changeset
92 }
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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parents: 6273
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93 }
2808
b57c95094b68 Finished work on parsing meta information and data specific to single bed heights files in MINFO.
Ingo Weinzierl <ingo.weinzierl@intevation.de>
parents: 2806
diff changeset
94
6298
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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95 Double uncertainty = null;
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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diff changeset
96 if (values[2].length() > 0) {
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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parents: 6273
diff changeset
97 try {
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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diff changeset
98 uncertainty = new Double(nf.parse(values[2]).doubleValue());
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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parents: 6273
diff changeset
99 }
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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parents: 6273
diff changeset
100 catch (ParseException e) {
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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101 log.warn("BSP: unparseable uncertainty value " + values[2]);
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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parents: 6273
diff changeset
102 }
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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parents: 6273
diff changeset
103 }
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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parents: 6273
diff changeset
104
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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105 Double dataGap = null;
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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106 if (values[3].length() > 0) {
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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parents: 6273
diff changeset
107 try {
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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108 dataGap = new Double(nf.parse(values[3]).doubleValue());
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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parents: 6273
diff changeset
109 }
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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110 catch (ParseException e) {
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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111 log.warn("BSP: unparseable data gap " + values[3]);
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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parents: 6273
diff changeset
112 }
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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parents: 6273
diff changeset
113 }
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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114
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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115 Double soundingWidth = null;
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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116 if (values[4].length() > 0) {
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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117 try {
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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118 soundingWidth = new Double(nf.parse(values[4]).doubleValue());
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parents: 6273
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119 }
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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120 catch (ParseException e) {
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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121 log.warn("BSP: unparseable sounding width " + values[4]);
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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parents: 6273
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122 }
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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parents: 6273
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123 }
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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124
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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125 Double width = null;
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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126 if (values[5].length() > 0) {
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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127 try {
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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128 width = new Double(nf.parse(values[5]).doubleValue());
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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129 }
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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130 catch (ParseException e) {
f095b58c95d9 Bedheight single parser: do not reject lines with missing values
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131 log.warn("BSP: unparseable width " + values[5]);
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132 }
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133 }
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134
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135 // try {
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136 ImportBedHeightSingleValue value = new ImportBedHeightSingleValue(
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137 (ImportBedHeightSingle) obj,
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138 km,
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139 height,//new Double(nf.parse(values[1]).doubleValue()),
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140 uncertainty,
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141 dataGap,
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142 soundingWidth,
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143 // parseBigDecimal(values[4], line),
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144 width
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145 );
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146
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147 obj.addValue(value);
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148 // }
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149 // catch (ParseException e) {
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150 // log.warn("BSP: unparseable value in data row.", e);
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151 //}
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152 }
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153
6298
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154 // private BigDecimal parseBigDecimal(String value, String line) {
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155 // BigDecimal result = null;
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156 // try {
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157 // Double dValue = Double.valueOf(value.replace(",", "."));
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158 // result = new BigDecimal(dValue.doubleValue());
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159 // }
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160 // catch (NumberFormatException nfe) {
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161 // log.warn(
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162 // "Could not parse " +
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163 // value +
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164 // " in bed heigt single row: "
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165 // + line);
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166 // }
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167 // return result;
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168 // }
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169 }
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170 // vim:set ts=4 sw=4 si et sta sts=4 fenc=utf8 :
http://dive4elements.wald.intevation.org