Mercurial > dive4elements > river

annotate flys-artifacts/src/main/java/de/intevation/flys/artifacts/model/fixings/FixCalculation.java @ 3451:b5eec54bd4a2

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FixA: Removed some inner whitespace. flys-artifacts/trunk@5114 c6561f87-3c4e-4783-a992-168aeb5c3f6f
author Sascha L. Teichmann <sascha.teichmann@intevation.de>
date Mon, 23 Jul 2012 16:22:30 +0000
parents e111902834d3
children d2ae58f6730d
rev   line source
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diff changeset
1 package de.intevation.flys.artifacts.model.fixings;
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2
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3 import de.intevation.artifacts.common.utils.StringUtils;
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4
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5 import de.intevation.flys.artifacts.access.FixAccess;
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6
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7 import de.intevation.flys.artifacts.math.fitting.Function;
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8 import de.intevation.flys.artifacts.math.fitting.FunctionFactory;
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9
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10 import de.intevation.flys.artifacts.model.Calculation;
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11 import de.intevation.flys.artifacts.model.CalculationResult;
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12 import de.intevation.flys.artifacts.model.FixingsColumn;
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13 import de.intevation.flys.artifacts.model.FixingsColumnFactory;
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14
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15 import de.intevation.flys.artifacts.model.FixingsOverview.Fixing.Filter;
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16
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17 import de.intevation.flys.artifacts.model.FixingsOverview.Fixing;
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18 import de.intevation.flys.artifacts.model.FixingsOverview.IdsFilter;
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20 import de.intevation.flys.artifacts.model.FixingsOverview;
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21 import de.intevation.flys.artifacts.model.FixingsOverviewFactory;
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22 import de.intevation.flys.artifacts.model.Parameters;
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23
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24 import de.intevation.flys.utils.DoubleUtil;
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25 import de.intevation.flys.utils.KMIndex;
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26
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27 import java.util.ArrayList;
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28 import java.util.Date;
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29 import java.util.HashMap;
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30 import java.util.List;
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31 import java.util.Map;
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32
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33 import org.apache.log4j.Logger;
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34
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35 public abstract class FixCalculation
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36 extends Calculation
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37 {
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38 private static Logger log = Logger.getLogger(FixCalculation.class);
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39
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40 public static final double EPSILON = 1e-4;
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41
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42 public static final String [] STANDARD_COLUMNS = {
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43 "km", "chi_sqr", "max_q", "std-dev"
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44 };
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45
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46 protected static class FitResult {
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47
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48 protected Parameters parameters;
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49 protected KMIndex<QWD []> referenced;
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50 protected KMIndex<QW []> outliers;
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51
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52 public FitResult() {
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53 }
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54
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55 public FitResult(
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56 Parameters parameters,
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57 KMIndex<QWD []> referenced,
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58 KMIndex<QW []> outliers
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59 ) {
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60 this.parameters = parameters;
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61 this.referenced = referenced;
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62 this.outliers = outliers;
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63 }
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64
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65 public Parameters getParameters() {
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66 return parameters;
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67 }
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68
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69 public KMIndex<QWD []> getReferenced() {
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70 return referenced;
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71 }
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72
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73 public KMIndex<QW []> getOutliers() {
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74 return outliers;
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75 }
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76 } // class FitResult
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77
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78 /** Helper class to bundle the meta information of a column
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79 * and the real data.
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80 */
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81 protected static class Column {
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82
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83 protected Fixing.Column meta;
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84 protected FixingsColumn data;
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85
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86 public Column() {
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87 }
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88
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89 public Column(Fixing.Column meta, FixingsColumn data) {
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90 this.meta = meta;
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91 this.data = data;
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92 }
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93
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94 public Date getDate() {
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95 return meta.getStartTime();
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96 }
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97
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98 public String getDescription() {
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99 return meta.getDescription();
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100 }
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101
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102 public boolean getQW(
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103 double km,
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104 double [] qs,
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105 double [] ws,
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106 int index
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107 ) {
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108 qs[index] = data.getQ(km);
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109 return data.getW(km, ws, index);
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110 }
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111
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112 public boolean getQW(double km, double [] wq) {
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113 data.getW(km, wq, 0);
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114 if (Double.isNaN(wq[0])) return false;
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115 wq[1] = data.getQ(km);
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116 return !Double.isNaN(wq[1]);
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117 }
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118 } // class Column
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119
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120 /**
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121 * Helper class to find the data belonging to meta info more quickly.
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122 */
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123 protected static class ColumnCache {
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124
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125 protected Map<Integer, Column> columns;
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126
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127 public ColumnCache() {
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128 columns = new HashMap<Integer, Column>();
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129 }
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130
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131 public Column getColumn(Fixing.Column meta) {
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132 Integer key = meta.getId();
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133 Column column = columns.get(key);
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134 if (column == null) {
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135 FixingsColumn data = FixingsColumnFactory
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136 .getInstance()
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137 .getColumnData(meta);
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138 if (data != null) {
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139 column = new Column(meta, data);
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140 columns.put(key, column);
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141 }
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142 }
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143 return column;
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144 }
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145 } // class ColumnCache
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146
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147
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148 protected String river;
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149 protected double from;
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150 protected double to;
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151 protected double step;
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152 protected boolean preprocessing;
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153 protected String function;
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154 protected int [] events;
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155 protected int qSectorStart;
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156 protected int qSectorEnd;
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157
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158 public FixCalculation() {
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159 }
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160
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161 public FixCalculation(FixAccess access) {
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162 String river = access.getRiver();
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163 Double from = access.getFrom();
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164 Double to = access.getTo();
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165 Double step = access.getStep();
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166 String function = access.getFunction();
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167 int [] events = access.getEvents();
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168 Integer qSectorStart = access.getQSectorStart();
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169 Integer qSectorEnd = access.getQSectorEnd();
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170 Boolean preprocessing = access.getPreprocessing();
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171
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172 if (river == null) {
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173 addProblem("fix.missing.river");
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174 }
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175
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176 if (from == null) {
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177 addProblem("fix.missing.from");
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178 }
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179
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180 if (to == null) {
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181 addProblem("fix.missing.to");
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182 }
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183
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184 if (step == null) {
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185 addProblem("fix.missing.step");
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186 }
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187
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188 if (function == null) {
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189 addProblem("fix.missing.function");
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190 }
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191
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192 if (events == null || events.length < 1) {
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193 addProblem("fix.missing.events");
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194 }
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195
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196 if (qSectorStart == null) {
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197 addProblem("fix.missing.qstart.sector");
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198 }
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199
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200 if (qSectorEnd == null) {
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201 addProblem("fix.missing.qend.sector");
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202 }
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203
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204 if (preprocessing == null) {
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205 addProblem("fix.missing.preprocessing");
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206 }
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207
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208 if (!hasProblems()) {
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209 this.river = river;
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210 this.from = from;
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211 this.to = to;
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212 this.step = step;
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213 this.function = function;
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214 this.events = events;
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215 this.qSectorStart = qSectorStart;
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216 this.qSectorEnd = qSectorEnd;
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217 this.preprocessing = preprocessing;
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218 }
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219 }
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220
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221 protected static String toString(
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222 String [] parameterNames,
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223 double [] values
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224 ) {
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225 StringBuilder sb = new StringBuilder();
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226 for (int i = 0; i < parameterNames.length; ++i) {
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227 if (i > 0) sb.append(", ");
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228 sb.append(parameterNames[i]).append(": ").append(values[i]);
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229 }
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230 return sb.toString();
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231 }
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232
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233 protected Filter createFilter() {
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234 return new IdsFilter(events);
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235 }
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236
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237 protected List<Column> getEventColumns(FixingsOverview overview) {
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238
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239 FixingsColumnFactory fcf = FixingsColumnFactory.getInstance();
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240
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241 Filter filter = createFilter();
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242
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243 List<Fixing.Column> metas = overview.filter(null, filter);
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244
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245 List<Column> columns = new ArrayList<Column>(metas.size());
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246
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247 for (Fixing.Column meta: metas) {
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248
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249 FixingsColumn data = fcf.getColumnData(meta);
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250 if (data == null) {
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251 addProblem("fix.cannot.load.data");
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252 }
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253 else {
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254 columns.add(new Column(meta, data));
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255 }
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256 }
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257
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258 return columns;
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259 }
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260
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261 protected FitResult doFitting(FixingsOverview overview, Function func) {
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262
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263 boolean debug = log.isDebugEnabled();
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264
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265 final List<Column> eventColumns = getEventColumns(overview);
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266
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267 if (eventColumns.size() < 2) {
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268 addProblem("fix.too.less.data.columns");
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269 return null;
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270 }
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271
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272 final double [] qs = new double[eventColumns.size()];
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273 final double [] ws = new double[qs.length];
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274 final boolean [] interpolated = new boolean[ws.length];
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275
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276 Fitting.QWDFactory qwdFactory = new Fitting.QWDFactory() {
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277 @Override
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278 public QWD create(double q, double w) {
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279 // Check all the event columns for close match
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280 // and take the description and the date from meta.
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281 for (int i = 0; i < qs.length; ++i) {
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282 if (Math.abs(qs[i]-q) < EPSILON
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283 && Math.abs(ws[i]-w) < EPSILON) {
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284 Column column = eventColumns.get(i);
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285 return new QWD(
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286 qs[i], ws[i],
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287 column.getDescription(),
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288 column.getDate(),
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289 interpolated[i],
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290 0d);
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291 }
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292 }
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293 log.warn("cannot find column for (" + q + ", " + w + ")");
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294 return new QWD(q, w);
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295 }
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296 };
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297
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298 Fitting fitting = new Fitting(func, qwdFactory, preprocessing);
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299
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300 String [] parameterNames = func.getParameterNames();
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301
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302 Parameters results =
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303 new Parameters(
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304 StringUtils.join(STANDARD_COLUMNS, parameterNames));
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305
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306 boolean invalid = false;
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307
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308 double [] kms = DoubleUtil.explode(from, to, step / 1000.0);
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309
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310 if (debug) {
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311 log.debug("number of kms: " + kms.length);
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312 }
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313
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314 KMIndex<QW []> outliers = new KMIndex<QW []>();
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315 KMIndex<QWD []> referenced = new KMIndex<QWD []>(kms.length);
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316
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317 int kmIndex = results.columnIndex("km");
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318 int chiSqrIndex = results.columnIndex("chi_sqr");
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319 int maxQIndex = results.columnIndex("max_q");
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320 int stdDevIndex = results.columnIndex("std-dev");
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321 int [] parameterIndices = results.columnIndices(parameterNames);
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322
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323 int numFailed = 0;
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324
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325 for (int i = 0; i < kms.length; ++i) {
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326 double km = kms[i];
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327
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328 // Fill Qs and Ws from event columns.
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329 for (int j = 0; j < ws.length; ++j) {
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330 interpolated[j] = !eventColumns.get(j).getQW(km, qs, ws, j);
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331 }
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332
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333 fitting.reset();
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334
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335 if (!fitting.fit(qs, ws)) {
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336 ++numFailed;
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337 addProblem(km, "fix.fitting.failed");
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338 continue;
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339 }
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340
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341 referenced.add(km, fitting.referencedToArray());
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342
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343 if (fitting.hasOutliers()) {
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344 outliers.add(km, fitting.outliersToArray());
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345 }
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346
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347 int row = results.newRow();
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348 double [] values = fitting.getParameters();
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349
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350 results.set(row, kmIndex, km);
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351 results.set(row, chiSqrIndex, fitting.getChiSquare());
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352 results.set(row, stdDevIndex, fitting.getStandardDeviation());
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353 results.set(row, maxQIndex, fitting.getMaxQ());
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354 invalid |= results.set(row, parameterIndices, values);
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355
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356 if (debug) {
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357 log.debug("km: "+km+" " + toString(parameterNames, values));
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358 }
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parents: 3434
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359 }
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parents: 3434
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360
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361 if (debug) {
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362 log.debug("success: " + (kms.length - numFailed));
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parents: 3434
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363 log.debug("failed: " + numFailed);
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parents: 3434
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364 }
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parents: 3434
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365
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parents: 3434
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366 if (invalid) {
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parents: 3434
diff changeset
367 addProblem("fix.invalid.values");
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parents: 3434
diff changeset
368 results.removeNaNs();
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parents: 3434
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369 }
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parents: 3434
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370
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parents: 3434
diff changeset
371 outliers.sort();
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parents: 3434
diff changeset
372 referenced.sort();
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parents: 3434
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373
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374 return new FitResult(
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parents: 3434
diff changeset
375 results,
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parents: 3434
diff changeset
376 referenced,
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parents: 3434
diff changeset
377 outliers);
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parents: 3434
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378 }
3437
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parents: 3435
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379
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380 public CalculationResult calculate() {
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381 FixingsOverview overview =
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diff changeset
382 FixingsOverviewFactory.getOverview(river);
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parents: 3435
diff changeset
383
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parents: 3435
diff changeset
384 if (overview == null) {
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parents: 3435
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385 addProblem("fix.no.overview.available");
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parents: 3435
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386 }
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parents: 3435
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387
e111902834d3 FixA: Made calculation base class abstract. Sub classes are called with fixings overview an function to fit.
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parents: 3435
diff changeset
388 Function func = FunctionFactory.getInstance()
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parents: 3435
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389 .getFunction(function);
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parents: 3435
diff changeset
390
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parents: 3435
diff changeset
391 if (func == null) {
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parents: 3435
diff changeset
392 addProblem("fix.invalid.function.name");
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parents: 3435
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393 }
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parents: 3435
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394
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parents: 3435
diff changeset
395 if (hasProblems()) {
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parents: 3435
diff changeset
396 return new CalculationResult(this);
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parents: 3435
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397 }
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parents: 3435
diff changeset
398
e111902834d3 FixA: Made calculation base class abstract. Sub classes are called with fixings overview an function to fit.
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parents: 3435
diff changeset
399 return innerCalculate(overview, func);
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parents: 3435
diff changeset
400 }
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parents: 3435
diff changeset
401
e111902834d3 FixA: Made calculation base class abstract. Sub classes are called with fixings overview an function to fit.
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parents: 3435
diff changeset
402 protected abstract CalculationResult innerCalculate(
e111902834d3 FixA: Made calculation base class abstract. Sub classes are called with fixings overview an function to fit.
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parents: 3435
diff changeset
403 FixingsOverview overview,
e111902834d3 FixA: Made calculation base class abstract. Sub classes are called with fixings overview an function to fit.
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parents: 3435
diff changeset
404 Function function
e111902834d3 FixA: Made calculation base class abstract. Sub classes are called with fixings overview an function to fit.
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parents: 3435
diff changeset
405 );
3419
da7cf0e3ccaa FixA: Created a common base class for the fixing related calculations.
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parents:
diff changeset
406 }
da7cf0e3ccaa FixA: Created a common base class for the fixing related calculations.
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parents:
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407 // vim:set ts=4 sw=4 si et sta sts=4 fenc=utf8 :
http://dive4elements.wald.intevation.org