Mercurial > dive4elements > river

annotate flys-backend/contrib/import_river.sh @ 5169:db1a000a21a9

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Make OPTIONAL_LIBS overwritable and fix geo importer call
author Andre Heinecke <aheinecke@intevation.de>
date Mon, 04 Mar 2013 17:08:14 +0100
parents 650f94ec3122
children b3a15fa3d88e
rev   line source
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1 #!/bin/bash
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2 # Import script for rivers
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3 #
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4 # Authors:
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5 # Andre Heinecke <aheinecke@intevation.de>
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6 #
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7 # Copyright:
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8 # Copyright (C) 2013 Intevation GmbH
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9 #
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10 # This program is free software; you can redistribute it and/or
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11 # modify it under the terms of the GNU General Public License
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12 # as published by the Free Software Foundation; either version 2
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13 # of the License, or (at your option) any later version.
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14 #
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15 # This program is distributed in the hope that it will be useful,
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16 # but WITHOUT ANY WARRANTY; without even the implied warranty of
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17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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18 # GNU General Public License for more details.
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19 #
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20 # You should have received a copy of the GNU General Public License
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21 # along with this program; if not, write to the Free Software
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22 # Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
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23
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24 set -e
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25
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26 # Default settings
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27 DEFAULT_HOST=localhost
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28 DEFAULT_PORT=1521
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29 DEFAULT_USER=flys_dami
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30 DEFAULT_PASS=flys_dami
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31 DEFAULT_LOG=$PWD/logs
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32 DEFAULT_BACKEND_NAME="XE"
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33 JAR="hydr_morph/importer.jar"
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34 IMPORTER_DRY_RUN=false
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35 IMPORTER_MAINVALUE_TYPES=QWTD
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36 IMPORTER_ANNOTATION_TYPES="conf/annotation-types.xml"
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37
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38
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39 MIN_MEMORY="8024m"
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40
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41 if [ -z "$OPTIONAL_LIBS" ]; then
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42 OPTIONAL_LIBS="${DIR}"/../opt
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43 fi
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44
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45 if [ -d "$OPTIONAL_LIBS" ]; then
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46 export PATH="$OPTIONAL_LIBS/bin:$PATH"
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47 export LD_LIBRARY_PATH="$OPTIONAL_LIBS/lib:$LD_LIBRARY_PATH"
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48 export LD_LIBRARY_PATH="$OPTIONAL_LIBS/lib64:$LD_LIBRARY_PATH"
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49 export PYTHONPATH="$OPTIONAL_LIBS/lib/python2.6/site-packages:$PYTHONPATH"
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50 export PYTHONPATH="$OPTIONAL_LIBS/lib64/python2.6/site-packages:$PYTHONPATH"
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51 export GDAL_DATA="$OPTIONAL_LIBS/share/gdal"
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52 fi
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53
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54 usage(){
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55 cat << EOF
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56
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57 usage: $0 [options] gew_file
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58
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59 Import a river described by the gew_file
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60
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61 OPTIONS:
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62 -?, --help Show this message
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63 -u, --username=<username> Database username. Default: $DEFAULT_USER
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64 -w, --password=<password> Database password. Default: $DEFAULT_PASS
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65 -h, --host=<host> Connect to database on host <host>.
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66 Default: $DEFAULT_HOST
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67 -p, --port=<number> Use port number <number>. Default: $DEFAULT_PORT
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68 -d, --db-name=<database_name> Name of the database / backend. Default: $DEFAULT_BACKEND_NAME
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69 -l, --log-dir=<directory> Directory in which to create the log files.
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70 Default: $LOG_DIR
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71 --postgres Database is PostgreSQL
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72 --skip-hydro Skip import of hydrological data
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73 --skip-morpho Skip import of morphological data
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74 --skip-geo Skip import of geographic data
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75 --skip-wst Skip import of wst data
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76 EOF
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77 exit 0
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78 }
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79
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80 OPTS=`getopt -o ?u:w:h:p:d: \
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81 -l help,username:,password:,host:,port:,db-name:,skip-hydro,skip-morpho,skip-geo,skip-wst \
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82 -n $0 -- "$@"`
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83 if [ $? != 0 ] ; then usage; fi
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84 eval set -- "$OPTS"
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85 while true ; do
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86 case "$1" in
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87 "-?"|"--help")
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88 usage;;
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89 "--")
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90 shift
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91 break;;
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92 "-u"|"--username")
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93 USER=$2
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94 shift 2;;
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95 "-w"|"--password")
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96 PASS=$2
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97 shift 2;;
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98 "-h"|"--host")
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99 HOST=$2
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100 shift 2;;
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101 "-p"|"--port")
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102 PORT=$2
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103 shift 2;;
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104 "-l"|"--log-dir")
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105 LOG=$2
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106 shift 2;;
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107 "-d"|"--db-name")
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108 BACKEND_NAME=$2
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109 shift 2;;
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110 "--skip-hydro")
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111 SKIP_HYDRO="TRUE"
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112 shift;;
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113 "--skip-morpho")
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114 SKIP_MORPHO="TRUE"
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115 shift;;
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116 "--skip-wst")
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117 SKIP_WST="TRUE"
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118 shift;;
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119 "--skip-geo")
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120 SKIP_GEO="TRUE"
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121 shift;;
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122 "--postgres")
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123 POSTGRES="TRUE"
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124 shift;;
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125 *)
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126 echo "Unknown Option $1"
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127 usage;;
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128 esac
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129 done
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130
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131 if [ -z $USER ]; then
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132 USER=$DEFAULT_USER
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133 fi
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134 if [ -z $PASS ]; then
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135 PASS=$DEFAULT_PASS
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136 fi
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137 if [ -z $PORT ]; then
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138 PORT=$DEFAULT_PORT
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139 fi
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140 if [ -z $HOST ]; then
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141 HOST=$DEFAULT_HOST
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142 fi
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143 if [ -z $BACKEND_NAME ]; then
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144 BACKEND_NAME=$DEFAULT_BACKEND_NAME
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145 fi
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146 if [ -z $LOGDIR ]; then
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147 LOG=$DEFAULT_LOG
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148 fi
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149
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parents:
diff changeset
150 if [ $# != 1 ]; then
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parents:
diff changeset
151 usage
a0abb6787ab1 Add first version of import_river script
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parents:
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152 fi
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parents:
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153
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parents:
diff changeset
154 if [ ! -r $1 ]; then
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parents:
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155 echo "Could not open $1 please ensure it exists and is readable"
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156 fi
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parents:
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157
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158 GEW_FILE="$1"
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159 RIVER_NAME=$(grep "Gew.sser" "$1" | awk '{print $2}')
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160 DATE=$(date +%Y.%m.%d_%H%M)
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161 LOG_DIR=${LOG}/${RIVER_NAME}-$DATE
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162 mkdir -p ${LOG_DIR}
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diff changeset
163
a0abb6787ab1 Add first version of import_river script
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164 if [ "POSTGRES" = "TRUE" ]; then
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165 JAR=$(echo "$JAR" | sed 's/importer/importer_psql/')
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166 if [ ! -r "$JAR" ]; then
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167 echo "Could not find Postgres importer $JAR"
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168 exit 1
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parents:
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169 fi
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diff changeset
170 OGR_CONNECTION="PG:dbname=$BACKEND_NAME host=$HOST port=$PORT \
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diff changeset
171 user=$USER password=$PASS"
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172 BACKEND_DB_PREFIX="jdbc:postgresql:"
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Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
173 BACKEND_DB_DRIVER="org.postgresql.Driver"
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diff changeset
174 BACKEND_DB_DIALECT="org.hibernate.dialect.PostgreSQLDialect"
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diff changeset
175 else
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176 BACKEND_DB_PREFIX="jdbc:oracle:thin:@"
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177 BACKEND_DB_DRIVER="oracle.jdbc.OracleDriver"
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178 BACKEND_DB_DIALECT="org.hibernate.dialect.OracleDialect"
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179 fi
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180
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181 BACKEND_URL=$BACKEND_DB_PREFIX//$HOST:$PORT/$BACKEND_NAME
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182
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183 echo "Importing $RIVER_NAME into $BACKEND_URL."
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184
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185 import_hydro(){
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186 LOG_FILE=${LOG_DIR}/hydro.log
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187 echo Importing Hydrological data.
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188 echo Logging into: $LOG_FILE
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diff changeset
189 sed 's!./import.log!'"$LOG_FILE"'!' conf/log4j.properties > $LOG_DIR/log4j.properties
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diff changeset
190 java -jar \
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parents:
diff changeset
191 -Xmx$MIN_MEMORY \
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diff changeset
192 -server \
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diff changeset
193 -Dlog4j.configuration=file://$LOG_DIR/log4j.properties \
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parents:
diff changeset
194 -Dflys.backend.user=$USER \
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parents:
diff changeset
195 -Dflys.backend.password=$PASS \
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parents:
diff changeset
196 -Dflys.backend.url=$BACKEND_URL \
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diff changeset
197 -Dflys.backend.driver=$BACKEND_DB_DRIVER \
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diff changeset
198 -Dflys.backend.dialect=$BACKEND_DB_DIALECT \
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diff changeset
199 -Dflys.backend.importer.infogew.file="$GEW_FILE" \
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parents:
diff changeset
200 -Dflys.backend.main.value.types=$IMPORTER_MAINVALUE_TYPES \
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parents:
diff changeset
201 -Dflys.backend.importer.annotation.types=$IMPORTER_ANNOTATION_TYPES \
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parents:
diff changeset
202 -Dflys.backend.importer.dry.run=$IMPORTER_DRY_RUN \
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parents:
diff changeset
203 -Dflys.backend.importer.skip.annotations=false \
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parents:
diff changeset
204 -Dflys.backend.importer.skip.bwastr=false \
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parents:
diff changeset
205 -Dflys.backend.importer.skip.da50s=false \
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parents:
diff changeset
206 -Dflys.backend.importer.skip.da66s=false \
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parents:
diff changeset
207 -Dflys.backend.importer.skip.extra.wsts=false \
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parents:
diff changeset
208 -Dflys.backend.importer.skip.fixations=false \
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diff changeset
209 -Dflys.backend.importer.skip.flood.water=false \
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parents:
diff changeset
210 -Dflys.backend.importer.skip.flood.protection=false \
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diff changeset
211 -Dflys.backend.importer.skip.gauges=false \
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parents:
diff changeset
212 -Dflys.backend.importer.skip.historical.discharge.tables=false \
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parents:
diff changeset
213 -Dflys.backend.importer.skip.hyks=false \
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parents:
diff changeset
214 -Dflys.backend.importer.skip.official.lines=false \
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parents:
diff changeset
215 -Dflys.backend.importer.skip.prfs=false \
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parents:
diff changeset
216 -Dflys.backend.importer.skip.w80s=false \
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parents:
diff changeset
217 -Dflys.backend.importer.skip.wst=true \
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Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
218 -Dflys.backend.importer.skip.waterlevel.differences=true \
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parents:
diff changeset
219 -Dflys.backend.importer.skip.waterlevels=true \
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parents:
diff changeset
220 -Dflys.backend.importer.skip.sq.relation=true \
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parents:
diff changeset
221 -Dflys.backend.importer.skip.sediment.density=true \
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Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
222 -Dflys.backend.importer.skip.sediment.yield=true \
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Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
223 -Dflys.backend.importer.skip.morphological.width=true \
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Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
224 -Dflys.backend.importer.skip.flow.velocity=true \
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Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
225 -Dflys.backend.importer.skip.bed.height.single=true \
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Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
226 -Dflys.backend.importer.skip.bed.height.epoch=true \
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Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
227 $JAR
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
228 }
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
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229
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
230 import_morpho(){
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diff changeset
231 LOG_FILE=${LOG_DIR}/morpho.log
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Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
232 echo Importing Morphological data.
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Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
233 echo Logging into: $LOG_FILE
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Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
234 sed 's!./import.log!'"$LOG_FILE"'!' conf/log4j.properties > $LOG_DIR/log4j.properties
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
235 java -jar \
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
236 -Xmx$MIN_MEMORY \
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
237 -server \
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
238 -Dlog4j.configuration=file://$LOG_DIR/log4j.properties \
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
239 -Dflys.backend.user=$USER \
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
240 -Dflys.backend.password=$PASS \
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
241 -Dflys.backend.url=$BACKEND_URL \
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
242 -Dflys.backend.driver=$BACKEND_DB_DRIVER \
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
243 -Dflys.backend.dialect=$BACKEND_DB_DIALECT \
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Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
244 -Dflys.backend.importer.infogew.file="$GEW_FILE" \
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
245 -Dflys.backend.main.value.types=$IMPORTER_MAINVALUE_TYPES \
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
246 -Dflys.backend.importer.annotation.types=$IMPORTER_ANNOTATION_TYPES \
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
247 -Dflys.backend.importer.dry.run=$IMPORTER_DRY_RUN \
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
248 -Dflys.backend.importer.skip.annotations=true \
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Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
249 -Dflys.backend.importer.skip.bwastr=true \
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Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
250 -Dflys.backend.importer.skip.da50s=true \
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Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
251 -Dflys.backend.importer.skip.da66s=true \
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Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
252 -Dflys.backend.importer.skip.extra.wsts=true \
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Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
253 -Dflys.backend.importer.skip.fixations=true \
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Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
254 -Dflys.backend.importer.skip.flood.water=true \
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Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
255 -Dflys.backend.importer.skip.flood.protection=true \
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Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
256 -Dflys.backend.importer.skip.gauges=true \
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Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
257 -Dflys.backend.importer.skip.historical.discharge.tables=true \
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
258 -Dflys.backend.importer.skip.hyks=true \
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Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
259 -Dflys.backend.importer.skip.official.lines=true \
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Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
260 -Dflys.backend.importer.skip.prfs=true \
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
261 -Dflys.backend.importer.skip.w80s=true \
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
262 -Dflys.backend.importer.skip.wst=true \
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
263 -Dflys.backend.importer.skip.waterlevel.differences=false \
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
264 -Dflys.backend.importer.skip.waterlevels=false \
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
265 -Dflys.backend.importer.skip.sq.relation=false \
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
266 -Dflys.backend.importer.skip.sediment.density=false \
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
267 -Dflys.backend.importer.skip.sediment.yield=false \
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Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
268 -Dflys.backend.importer.skip.morphological.width=false \
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
269 -Dflys.backend.importer.skip.flow.velocity=false \
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
270 -Dflys.backend.importer.skip.bed.height.single=false \
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Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
271 -Dflys.backend.importer.skip.bed.height.epoch=false \
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
272 $JAR
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
273 }
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
274
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
275 import_wst(){
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parents:
diff changeset
276 LOG_FILE=${LOG_DIR}/wst.log
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Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
277 echo Importing WST data.
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
278 echo Logging into: $LOG_FILE
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
279 sed 's!./import.log!'"$LOG_FILE"'!' conf/log4j.properties > $LOG_DIR/log4j.properties
a0abb6787ab1 Add first version of import_river script
Andre Heinecke <aheinecke@intevation.de>
parents:
diff changeset
280 java -jar \
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281 -Xmx$MIN_MEMORY \
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282 -server \
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283 -Dlog4j.configuration=file://$LOG_DIR/log4j.properties \
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284 -Dflys.backend.user=$USER \
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285 -Dflys.backend.password=$PASS \
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286 -Dflys.backend.url=$BACKEND_URL \
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287 -Dflys.backend.driver=$BACKEND_DB_DRIVER \
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288 -Dflys.backend.dialect=$BACKEND_DB_DIALECT \
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289 -Dflys.backend.importer.infogew.file="$GEW_FILE" \
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290 -Dflys.backend.main.value.types=$IMPORTER_MAINVALUE_TYPES \
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291 -Dflys.backend.importer.annotation.types=$IMPORTER_ANNOTATION_TYPES \
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292 -Dflys.backend.importer.dry.run=$IMPORTER_DRY_RUN \
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293 -Dflys.backend.importer.skip.annotations=true \
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294 -Dflys.backend.importer.skip.bwastr=true \
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295 -Dflys.backend.importer.skip.da50s=true \
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296 -Dflys.backend.importer.skip.da66s=true \
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297 -Dflys.backend.importer.skip.extra.wsts=true \
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298 -Dflys.backend.importer.skip.fixations=true \
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299 -Dflys.backend.importer.skip.flood.water=true \
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300 -Dflys.backend.importer.skip.flood.protection=true \
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301 -Dflys.backend.importer.skip.gauges=true \
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302 -Dflys.backend.importer.skip.historical.discharge.tables=true \
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303 -Dflys.backend.importer.skip.hyks=true \
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304 -Dflys.backend.importer.skip.official.lines=true \
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305 -Dflys.backend.importer.skip.prfs=true \
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306 -Dflys.backend.importer.skip.w80s=true \
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307 -Dflys.backend.importer.skip.wst=false \
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308 -Dflys.backend.importer.skip.waterlevel.differences=true \
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309 -Dflys.backend.importer.skip.waterlevels=true \
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310 -Dflys.backend.importer.skip.sq.relation=true \
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311 -Dflys.backend.importer.skip.sediment.density=true \
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312 -Dflys.backend.importer.skip.sediment.yield=true \
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313 -Dflys.backend.importer.skip.morphological.width=true \
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314 -Dflys.backend.importer.skip.flow.velocity=true \
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315 -Dflys.backend.importer.skip.bed.height.single=true \
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316 -Dflys.backend.importer.skip.bed.height.epoch=true \
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317 $JAR
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318 }
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319
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320 import_geo(){
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321 LOG_FILE=${LOG_DIR}/geo.log
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322 echo Importing Geographic data.
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323 echo Logging into: $LOG_FILE
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324
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325 RIVER_PATH=$(grep "WSTDatei:" "$GEW_FILE" | awk '{print $2}')
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326 RIVER_PATH=$(dirname "$RIVER_PATH")/../..
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327 RIVER_PATH=$(readlink -f "$RIVER_PATH")
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328
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329 exec python $(dirname $0)/geodaesie/shpimporter.py \
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330 --directory $RIVER_PATH \
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331 --river_name $RIVER_NAME \
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332 --ogr_connection "$OGR_CONNECTION" \
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333 --host $HOST \
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334 --user $USER \
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335 --password $PASS \
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336 --verbose 1 \
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337 > "$LOG_FILE" 2>&1
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338 }
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339
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340
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341 if [ "$SKIP_HYDRO" != "TRUE" ]; then
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342 import_hydro
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343 fi
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344 if [ "$SKIP_WST" != "TRUE" ]; then
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345 import_wst
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346 fi
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347 if [ "$SKIP_MORPHO" != "TRUE" ]; then
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348 import_morpho
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349 fi
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350 if [ "$SKIP_GEO" != "TRUE" ]; then
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351 import_geo
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352 fi
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