Mercurial > dive4elements > river

annotate artifacts/src/main/java/org/dive4elements/river/artifacts/model/fixings/FixCalculation.java @ 9099:850ce16034e9

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2.3.4.1.10 Berechnung mit Start-km > End-km
author gernotbelger
date Mon, 28 May 2018 13:22:45 +0200
parents 6650485c2c9b
children 202fd59b4f21
rev   line source
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4897a58c8746 River artifacts: Added new copyright headers.
Sascha L. Teichmann <teichmann@intevation.de>
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1 /* Copyright (C) 2011, 2012, 2013 by Bundesanstalt für Gewässerkunde
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2 * Software engineering by Intevation GmbH
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3 *
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4 * This file is Free Software under the GNU AGPL (>=v3)
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5 * and comes with ABSOLUTELY NO WARRANTY! Check out the
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6 * documentation coming with Dive4Elements River for details.
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7 */
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8
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9 package org.dive4elements.river.artifacts.model.fixings;
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10
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11 import java.util.ArrayList;
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12 import java.util.Date;
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13 import java.util.HashMap;
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14 import java.util.List;
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15 import java.util.Map;
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16
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17 import org.apache.log4j.Logger;
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18 import org.dive4elements.artifacts.common.utils.StringUtils;
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19 import org.dive4elements.river.artifacts.access.FixAccess;
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20 import org.dive4elements.river.artifacts.math.fitting.Function;
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21 import org.dive4elements.river.artifacts.math.fitting.FunctionFactory;
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22 import org.dive4elements.river.artifacts.model.Calculation;
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23 import org.dive4elements.river.artifacts.model.CalculationResult;
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24 import org.dive4elements.river.artifacts.model.FixingsColumn;
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25 import org.dive4elements.river.artifacts.model.FixingsColumnFactory;
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26 import org.dive4elements.river.artifacts.model.FixingsOverview;
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27 import org.dive4elements.river.artifacts.model.FixingsOverview.Fixing;
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28 import org.dive4elements.river.artifacts.model.FixingsOverview.Fixing.Filter;
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29 import org.dive4elements.river.artifacts.model.FixingsOverview.IdsFilter;
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30 import org.dive4elements.river.artifacts.model.FixingsOverviewFactory;
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31 import org.dive4elements.river.artifacts.model.Parameters;
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32 import org.dive4elements.river.utils.DoubleUtil;
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33 import org.dive4elements.river.utils.KMIndex;
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34
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35 /** Calculation base class for fix. */
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36 public abstract class FixCalculation extends Calculation {
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37 private static Logger log = Logger.getLogger(FixCalculation.class);
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38
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39 public static final double EPSILON = 1e-4;
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40
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41 public static final String[] STANDARD_COLUMNS = { "km", "chi_sqr", "max_q", "std-dev" };
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42
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43 protected static class FitResult {
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44
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45 protected Parameters parameters;
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46 protected KMIndex<QWD[]> referenced;
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47 protected KMIndex<QWI[]> outliers;
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48
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49 public FitResult() {
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50 }
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51
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52 public FitResult(final Parameters parameters, final KMIndex<QWD[]> referenced, final KMIndex<QWI[]> outliers) {
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53 this.parameters = parameters;
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54 this.referenced = referenced;
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55 this.outliers = outliers;
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56 }
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57
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58 public Parameters getParameters() {
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59 return this.parameters;
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60 }
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61
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62 public KMIndex<QWD[]> getReferenced() {
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63 return this.referenced;
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64 }
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65
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66 public KMIndex<QWI[]> getOutliers() {
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67 return this.outliers;
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68 }
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69 } // class FitResult
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70
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71 /**
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72 * Helper class to bundle the meta information of a column
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73 * and the real data.
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74 */
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75 protected static class Column {
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76
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77 protected Fixing.Column meta;
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78 protected FixingsColumn data;
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79 protected int index;
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80
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81 public Column() {
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82 }
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83
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84 public Column(final Fixing.Column meta, final FixingsColumn data, final int index) {
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85 this.meta = meta;
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86 this.data = data;
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87 this.index = index;
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88 }
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89
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90 public Date getDate() {
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91 return this.meta.getStartTime();
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92 }
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93
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94 public String getDescription() {
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95 return this.meta.getDescription();
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96 }
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97
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98 public int getIndex() {
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99 return this.index;
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100 }
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101
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102 public int getId() {
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103 return this.meta.getId();
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104 }
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105
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106 public boolean getQW(final double km, final double[] qs, final double[] ws, final int index) {
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107 qs[index] = this.data.getQ(km);
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108 return this.data.getW(km, ws, index);
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109 }
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110
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111 public boolean getQW(final double km, final double[] wq) {
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112 this.data.getW(km, wq, 0);
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113 if (Double.isNaN(wq[0]))
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114 return false;
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115 wq[1] = this.data.getQ(km);
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116 return !Double.isNaN(wq[1]);
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117 }
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118 } // class Column
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119
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120 /**
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121 * Helper class to find the data belonging to meta info more quickly.
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122 */
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123 protected static class ColumnCache {
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124
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125 protected Map<Integer, Column> columns;
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126
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127 public ColumnCache() {
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128 this.columns = new HashMap<>();
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129 }
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130
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131 public Column getColumn(final Fixing.Column meta) {
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132 final Integer key = meta.getId();
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133 Column column = this.columns.get(key);
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134 if (column == null) {
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135 final FixingsColumn data = FixingsColumnFactory.getInstance().getColumnData(meta);
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136 if (data != null) {
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137 column = new Column(meta, data, this.columns.size());
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138 this.columns.put(key, column);
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139 }
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140 }
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141 return column;
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142 }
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143 } // class ColumnCache
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144
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145 protected String river;
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146 protected double from;
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147 protected double to;
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148 protected double step;
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149 protected boolean preprocessing;
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150 protected String function;
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151 protected int[] events;
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152 protected int qSectorStart;
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153 protected int qSectorEnd;
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154
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155 public FixCalculation() {
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156 }
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157
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158 public FixCalculation(final FixAccess access) {
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159 final String river = access.getRiverName();
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160 final Double from = access.getLowerKm();
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161 final Double to = access.getUpperKm();
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162 final Double step = access.getStep();
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163 final String function = access.getFunction();
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164 final int[] events = access.getEvents();
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165 final Integer qSectorStart = access.getQSectorStart();
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166 final Integer qSectorEnd = access.getQSectorEnd();
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167 final Boolean preprocessing = access.getPreprocessing();
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168
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169 if (river == null) {
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170 addProblem("fix.missing.river");
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171 }
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172
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173 if (from == null) {
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174 addProblem("fix.missing.from");
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175 }
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176
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177 if (to == null) {
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178 addProblem("fix.missing.to");
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179 }
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180
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181 if (step == null) {
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182 addProblem("fix.missing.step");
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183 }
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184
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185 if (function == null) {
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186 addProblem("fix.missing.function");
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187 }
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188
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189 if (events == null || events.length < 1) {
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190 addProblem("fix.missing.events");
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191 }
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192
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193 if (qSectorStart == null) {
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194 addProblem("fix.missing.qstart.sector");
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195 }
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196
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197 if (qSectorEnd == null) {
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198 addProblem("fix.missing.qend.sector");
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199 }
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200
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201 if (preprocessing == null) {
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202 addProblem("fix.missing.preprocessing");
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203 }
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204
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205 if (!hasProblems()) {
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206 this.river = river;
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207 this.from = from;
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208 this.to = to;
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209 this.step = step;
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210 this.function = function;
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211 this.events = events;
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212 this.qSectorStart = qSectorStart;
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213 this.qSectorEnd = qSectorEnd;
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214 this.preprocessing = preprocessing;
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215 }
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216 }
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217
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218 protected static String toString(final String[] parameterNames, final double[] values) {
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219 final StringBuilder sb = new StringBuilder();
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220 for (int i = 0; i < parameterNames.length; ++i) {
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221 if (i > 0)
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222 sb.append(", ");
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223 sb.append(parameterNames[i]).append(": ").append(values[i]);
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224 }
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225 return sb.toString();
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226 }
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227
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228 /**
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229 * Create filter to accept only the chosen events.
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230 * This factored out out to be overwritten.
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231 */
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232 protected Filter createFilter() {
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233 return new IdsFilter(this.events);
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234 }
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235
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236 protected List<Column> getEventColumns(final FixingsOverview overview, final ColumnCache cc) {
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237 final FixingsColumnFactory fcf = FixingsColumnFactory.getInstance();
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238
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239 final Filter filter = createFilter();
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240
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241 final List<Fixing.Column> metas = overview.filter(null, filter);
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242
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243 final List<Column> columns = new ArrayList<>(metas.size());
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244
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245 for (final Fixing.Column meta : metas) {
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246
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247 final Column data = cc.getColumn(meta);
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248 if (data == null) {
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249 addProblem("fix.cannot.load.data");
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250 } else {
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251 columns.add(data);
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252 }
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253 }
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254
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255 return columns;
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256 }
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257
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258 // Fit a function to the given points from fixation.
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259 protected FitResult doFitting(final FixingsOverview overview, final ColumnCache cc, final Function func) {
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260 final boolean debug = log.isDebugEnabled();
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261
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262 final List<Column> eventColumns = getEventColumns(overview, cc);
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263
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264 if (eventColumns.size() < 2) {
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265 addProblem("fix.too.less.data.columns");
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266 return null;
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267 }
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268
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269 final double[] qs = new double[eventColumns.size()];
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270 final double[] ws = new double[qs.length];
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271 final boolean[] interpolated = new boolean[ws.length];
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272
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273 final Fitting.QWDFactory qwdFactory = new Fitting.QWDFactory() {
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274 @Override
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275 public QWD create(final double q, final double w) {
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276 // Check all the event columns for close match
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277 // and take the description and the date from meta.
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278 for (int i = 0; i < qs.length; ++i) {
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279 if (Math.abs(qs[i] - q) < EPSILON && Math.abs(ws[i] - w) < EPSILON) {
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280 final Column column = eventColumns.get(i);
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281 return new QWD(qs[i], ws[i], column.getDescription(), column.getDate(), interpolated[i], 0d, column.getId()); // Use database id here
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282 }
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283 }
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284 log.warn("cannot find column for (" + q + ", " + w + ")");
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285 return new QWD(q, w);
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286 }
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287 };
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288
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289 final Fitting fitting = new Fitting(func, qwdFactory, this.preprocessing);
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290
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291 final String[] parameterNames = func.getParameterNames();
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292
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293 final Parameters results = new Parameters(StringUtils.join(STANDARD_COLUMNS, parameterNames));
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294
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295 boolean invalid = false;
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296
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297 final double[] kms = DoubleUtil.explode(this.from, this.to, this.step / 1000.0);
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298
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299 if (debug) {
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300 log.debug("number of kms: " + kms.length);
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301 }
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302
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303 final KMIndex<QWI[]> outliers = new KMIndex<>();
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304 final KMIndex<QWD[]> referenced = new KMIndex<>(kms.length);
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305
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306 final int kmIndex = results.columnIndex("km");
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307 final int chiSqrIndex = results.columnIndex("chi_sqr");
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308 final int maxQIndex = results.columnIndex("max_q");
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309 final int stdDevIndex = results.columnIndex("std-dev");
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310 final int[] parameterIndices = results.columnIndices(parameterNames);
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311
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312 int numFailed = 0;
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313
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314 for (final double km2 : kms) {
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315 final double km = km2;
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316
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317 // Fill Qs and Ws from event columns.
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318 for (int j = 0; j < ws.length; ++j) {
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319 interpolated[j] = !eventColumns.get(j).getQW(km, qs, ws, j);
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320 }
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321
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322 fitting.reset();
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323
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324 if (!fitting.fit(qs, ws)) {
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83bb52fa0c32 (issue1529) Be more tolerant in the fitting.
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325 log.debug("Fitting for km: " + km + " failed");
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326 ++numFailed;
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327 addProblem(km, "fix.fitting.failed");
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328 continue;
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329 }
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330
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331 final QWD[] refs = fitting.referencedToArray();
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332
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333 referenced.add(km, refs);
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334
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335 if (fitting.hasOutliers()) {
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336 outliers.add(km, fitting.outliersToArray());
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337 }
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338
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339 final int row = results.newRow();
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340 final double[] values = fitting.getParameters();
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341
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342 results.set(row, kmIndex, km);
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343 results.set(row, chiSqrIndex, fitting.getChiSquare());
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344 results.set(row, stdDevIndex, fitting.getStandardDeviation());
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345 results.set(row, maxQIndex, fitting.getMaxQ());
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346 invalid |= results.set(row, parameterIndices, values);
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347
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348 if (debug) {
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349 log.debug("km: " + km + " " + toString(parameterNames, values));
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350 }
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351 }
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352
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353 if (debug) {
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354 log.debug("success: " + (kms.length - numFailed));
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355 log.debug("failed: " + numFailed);
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356 }
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357
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358 if (invalid) {
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359 addProblem("fix.invalid.values");
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360 results.removeNaNs();
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361 }
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362
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363 outliers.sort();
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364 referenced.sort();
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365
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366 return new FitResult(results, referenced, outliers);
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367 }
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368
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369 public CalculationResult calculate() {
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370 final FixingsOverview overview = FixingsOverviewFactory.getOverview(this.river);
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371
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372 if (overview == null) {
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373 addProblem("fix.no.overview.available");
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374 }
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375
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376 final Function func = FunctionFactory.getInstance().getFunction(this.function);
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377
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378 if (func == null) {
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379 addProblem("fix.invalid.function.name");
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380 }
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381
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382 if (hasProblems()) {
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383 return new CalculationResult(this);
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384 }
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385 final CalculationResult result = innerCalculate(overview, func);
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386
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387 if (result != null) {
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388 // Workaraound to deal with same dates in data set
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389 final Object o = result.getData();
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390 if (o instanceof FixResult) {
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391 final FixResult fr = (FixResult) o;
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392 fr.makeReferenceEventsDatesUnique();
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393 fr.remapReferenceIndicesToRank();
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394 }
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395 }
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396
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397 return result;
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398 }
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399
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400 protected abstract CalculationResult innerCalculate(FixingsOverview overview, Function function);
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401 }
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402 // vim:set ts=4 sw=4 si et sta sts=4 fenc=utf8 :
http://dive4elements.wald.intevation.org