Mercurial > dive4elements > river

annotate artifacts/src/main/java/org/dive4elements/river/artifacts/model/fixings/FixCalculation.java @ 9479:2b83d3a96703

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i18n TODO "benutzerdefiniert" = "custom" fixed
author gernotbelger
date Mon, 10 Sep 2018 15:31:55 +0200
parents 9744ce3c3853
children
rev   line source
5863
4897a58c8746 River artifacts: Added new copyright headers.
Sascha L. Teichmann <teichmann@intevation.de>
parents: 5838
diff changeset
1 /* Copyright (C) 2011, 2012, 2013 by Bundesanstalt für Gewässerkunde
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Sascha L. Teichmann <teichmann@intevation.de>
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2 * Software engineering by Intevation GmbH
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3 *
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Sascha L. Teichmann <teichmann@intevation.de>
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4 * This file is Free Software under the GNU AGPL (>=v3)
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5 * and comes with ABSOLUTELY NO WARRANTY! Check out the
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6 * documentation coming with Dive4Elements River for details.
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7 */
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8
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bd047b71ab37 Repaired internal references
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9 package org.dive4elements.river.artifacts.model.fixings;
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10
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11 import java.util.ArrayList;
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12 import java.util.List;
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13
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14 import org.apache.log4j.Logger;
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2b83d3a96703 i18n TODO "benutzerdefiniert" = "custom" fixed
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15 import org.dive4elements.artifacts.CallMeta;
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16 import org.dive4elements.artifacts.common.utils.StringUtils;
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17 import org.dive4elements.river.artifacts.access.FixAccess;
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18 import org.dive4elements.river.artifacts.math.fitting.Function;
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19 import org.dive4elements.river.artifacts.math.fitting.FunctionFactory;
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20 import org.dive4elements.river.artifacts.model.Calculation;
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21 import org.dive4elements.river.artifacts.model.CalculationResult;
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22 import org.dive4elements.river.artifacts.model.Parameters;
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23 import org.dive4elements.river.artifacts.model.fixings.FixingsOverview.IdsFilter;
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24 import org.dive4elements.river.utils.DoubleUtil;
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25
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26 /** Calculation base class for fix. */
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27 public abstract class FixCalculation extends Calculation {
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28
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29 private static final long serialVersionUID = 1L;
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30
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31 private static Logger log = Logger.getLogger(FixCalculation.class);
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32
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33 private static final String[] STANDARD_COLUMNS = { "km", "chi_sqr", "max_q", "std-dev" };
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34
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35 protected static class FitResult {
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36
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37 private final Parameters parameters;
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38
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39 private final FixResultColumns resultColumns;
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40
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41 public FitResult(final Parameters parameters, final FixResultColumns resultColumns) {
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42 this.parameters = parameters;
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43 this.resultColumns = resultColumns;
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44 }
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45
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46 public Parameters getParameters() {
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47 return this.parameters;
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48 }
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49
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50 public FixResultColumns getResultColumns() {
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51 return this.resultColumns;
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52 }
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53 }
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54
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55 protected String river;
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56 protected double from;
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57 protected double to;
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58 protected double step;
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59 protected boolean preprocessing;
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60 protected String function;
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61 protected int[] events;
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62 protected int qSectorStart;
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63 protected int qSectorEnd;
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64
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65 public FixCalculation() {
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66 }
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67
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68 public FixCalculation(final FixAccess access) {
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69 final String river = access.getRiverName();
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70 final Double from = access.getLowerKm();
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71 final Double to = access.getUpperKm();
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72 final Double step = access.getStep();
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73 final String function = access.getFunction();
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74 final int[] events = access.getEvents();
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75 final Integer qSectorStart = access.getQSectorStart();
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76 final Integer qSectorEnd = access.getQSectorEnd();
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77 final Boolean preprocessing = access.getPreprocessing();
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78
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79 if (river == null) {
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80 addProblem("fix.missing.river");
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81 }
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82
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83 if (from == null) {
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84 addProblem("fix.missing.from");
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85 }
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86
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87 if (to == null) {
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88 addProblem("fix.missing.to");
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89 }
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90
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91 if (step == null) {
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92 addProblem("fix.missing.step");
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93 }
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94
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95 if (function == null) {
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96 addProblem("fix.missing.function");
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97 }
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98
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99 if (events == null || events.length < 1) {
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100 addProblem("fix.missing.events");
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101 }
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102
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103 if (qSectorStart == null) {
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104 addProblem("fix.missing.qstart.sector");
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105 }
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106
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107 if (qSectorEnd == null) {
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108 addProblem("fix.missing.qend.sector");
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109 }
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110
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111 if (preprocessing == null) {
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112 addProblem("fix.missing.preprocessing");
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113 }
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114
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115 if (!hasProblems()) {
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116 this.river = river;
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117 this.from = from;
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118 this.to = to;
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119 this.step = step;
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120 this.function = function;
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121 this.events = events;
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122 this.qSectorStart = qSectorStart;
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123 this.qSectorEnd = qSectorEnd;
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124 this.preprocessing = preprocessing;
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125 }
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126 }
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127
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128 protected static String toString(final String[] parameterNames, final double[] values) {
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129 final StringBuilder sb = new StringBuilder();
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130 for (int i = 0; i < parameterNames.length; ++i) {
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131 if (i > 0)
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132 sb.append(", ");
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133 sb.append(parameterNames[i]).append(": ").append(values[i]);
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134 }
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135 return sb.toString();
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136 }
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137
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138 /**
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139 * Create filter to accept only the chosen events.
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140 * This factored out out to be overwritten.
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141 */
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142 protected FixingColumnFilter createFilter() {
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143 return new IdsFilter(this.events);
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144 }
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145
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146 protected List<FixingColumnWithData> getEventColumns(final FixingsOverview overview, final ColumnCache cc) {
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147 final FixingColumnFilter filter = createFilter();
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148
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149 final List<FixingColumn> metas = overview.filter(null, filter);
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150
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151 final List<FixingColumnWithData> columns = new ArrayList<>(metas.size());
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152
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153 for (final FixingColumn meta : metas) {
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154
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155 final FixingColumnWithData data = cc.getColumn(meta);
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156 if (data == null) {
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157 addProblem("fix.cannot.load.data");
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158 } else {
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159 columns.add(data);
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160 }
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161 }
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162
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163 return columns;
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164 }
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165
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166 // Fit a function to the given points from fixation.
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167 protected final FitResult doFitting(final FixingsOverview overview, final ColumnCache cc, final Function func) {
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168 final boolean debug = log.isDebugEnabled();
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169
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170 final FixResultColumns resultColumns = new FixResultColumns();
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171
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172 final List<FixingColumnWithData> eventColumns = getEventColumns(overview, cc);
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173
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174 if (eventColumns.size() < 2) {
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175 addProblem("fix.too.less.data.columns");
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176 return null;
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177 }
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178
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179 final String[] parameterNames = func.getParameterNames();
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180
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181 final Parameters results = new Parameters(StringUtils.join(STANDARD_COLUMNS, parameterNames));
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182
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183 boolean invalid = false;
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184
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185 final double[] kms = DoubleUtil.explode(this.from, this.to, this.step / 1000.0);
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186
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187 if (debug) {
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188 log.debug("number of kms: " + kms.length);
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189 }
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190
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191 final int kmIndex = results.columnIndex("km");
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192 final int chiSqrIndex = results.columnIndex("chi_sqr");
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193 final int maxQIndex = results.columnIndex("max_q");
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194 final int stdDevIndex = results.columnIndex("std-dev");
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195 final int[] parameterIndices = results.columnIndices(parameterNames);
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196
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197 int numFailed = 0;
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198
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199 for (final double km : kms) {
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200
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201 final Fitting fitting = Fitting.fit(resultColumns, km, func, this.preprocessing, eventColumns);
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202 if (fitting == null) {
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83bb52fa0c32 (issue1529) Be more tolerant in the fitting.
Andre Heinecke <aheinecke@intevation.de>
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203 log.debug("Fitting for km: " + km + " failed");
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204 ++numFailed;
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205 addProblem(km, "fix.fitting.failed");
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206 continue;
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207 }
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208
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209 final int row = results.newRow();
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210 final double[] values = fitting.getParameters();
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211
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212 results.set(row, kmIndex, km);
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213 results.set(row, chiSqrIndex, fitting.getChiSquare());
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214 results.set(row, stdDevIndex, fitting.getStandardDeviation());
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215 results.set(row, maxQIndex, fitting.getMaxQ());
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216 invalid |= results.set(row, parameterIndices, values);
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217
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218 if (debug) {
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219 log.debug("km: " + km + " " + toString(parameterNames, values));
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220 }
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221 }
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222
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223 if (debug) {
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224 log.debug("success: " + (kms.length - numFailed));
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225 log.debug("failed: " + numFailed);
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226 }
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227
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228 if (invalid) {
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229 addProblem("fix.invalid.values");
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230 results.removeNaNs();
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231 }
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232
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233 resultColumns.sortAll();
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234
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235 return new FitResult(results, resultColumns);
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236 }
3437
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237
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2b83d3a96703 i18n TODO "benutzerdefiniert" = "custom" fixed
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238 public CalculationResult calculate(final CallMeta meta) {
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239 final FixingsOverview overview = FixingsOverviewFactory.getOverview(this.river);
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240
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241 if (overview == null) {
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242 addProblem("fix.no.overview.available");
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243 }
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244
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245 final Function func = FunctionFactory.getInstance().getFunction(this.function);
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246
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247 if (func == null) {
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248 addProblem("fix.invalid.function.name");
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249 }
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250
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251 if (hasProblems())
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252 return new CalculationResult(this);
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253
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254 return innerCalculate(overview, func, meta);
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255 }
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256
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257 protected abstract CalculationResult innerCalculate(FixingsOverview overview, Function function, CallMeta meta);
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258 }
http://dive4elements.wald.intevation.org